Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP59_RS11690 Genome accession   NZ_OX419570
Coordinates   2283730..2284350 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6134     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2278730..2289350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP59_RS11650 (NRS6134_11600) ypqE 2279861..2280367 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  KJP59_RS11655 (NRS6134_11605) ypqA 2280505..2280924 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  KJP59_RS11660 (NRS6134_11610) yppG 2280945..2281322 (-) 378 WP_004398696.1 YppG family protein -
  KJP59_RS11665 (NRS6134_11615) yppF 2281510..2281698 (+) 189 WP_003230690.1 YppF family protein -
  KJP59_RS11670 (NRS6134_11620) yppE 2281737..2282108 (-) 372 WP_003246080.1 YppE family protein -
  KJP59_RS11675 (NRS6134_11625) yppD 2282154..2282399 (-) 246 WP_213415649.1 YppD family protein -
  KJP59_RS11680 (NRS6134_11630) sspM 2282598..2282702 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP59_RS11685 (NRS6134_11635) yppC 2282727..2283689 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  KJP59_RS11690 (NRS6134_11640) recU 2283730..2284350 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP59_RS11695 (NRS6134_11645) ponA 2284372..2287116 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  KJP59_RS11700 (NRS6134_11650) ypoC 2287192..2287686 (-) 495 WP_009967579.1 YpoC family protein -
  KJP59_RS11705 (NRS6134_11655) nth 2287683..2288342 (-) 660 WP_009967580.1 endonuclease III -
  KJP59_RS11710 (NRS6134_11660) dnaD 2288361..2289059 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1157417 KJP59_RS11690 WP_004399067.1 2283730..2284350(+) (recU) [Bacillus subtilis isolate NRS6134]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1157417 KJP59_RS11690 WP_004399067.1 2283730..2284350(+) (recU) [Bacillus subtilis isolate NRS6134]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment