Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KJP55_RS13425 Genome accession   NZ_OX419569
Coordinates   2563336..2564139 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6118     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2558336..2569139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP55_RS13400 (NRS6118_13330) glpQ 2559482..2560213 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  KJP55_RS13405 (NRS6118_13335) yqiI 2560292..2560912 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  KJP55_RS13410 (NRS6118_13340) yqiH 2560927..2561220 (-) 294 WP_003230284.1 lipoprotein -
  KJP55_RS13415 - 2561528..2561680 (+) 153 WP_003230276.1 hypothetical protein -
  KJP55_RS13420 (NRS6118_13345) yqiG 2561753..2562871 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  KJP55_RS13425 (NRS6118_13355) spo0A 2563336..2564139 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  KJP55_RS13430 (NRS6118_13360) spoIVB 2564415..2565695 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  KJP55_RS13435 (NRS6118_13365) recN 2565870..2567600 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  KJP55_RS13440 (NRS6118_13370) argR 2567637..2568086 (-) 450 WP_003230265.1 arginine repressor ArgR -
  KJP55_RS13445 (NRS6118_13375) yqxC 2568184..2569029 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1157332 KJP55_RS13425 WP_003226427.1 2563336..2564139(-) (spo0A) [Bacillus subtilis isolate NRS6118]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1157332 KJP55_RS13425 WP_003226427.1 2563336..2564139(-) (spo0A) [Bacillus subtilis isolate NRS6118]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment