Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP55_RS12440 Genome accession   NZ_OX419569
Coordinates   2386123..2386743 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6118     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2381123..2391743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP55_RS12400 (NRS6118_12335) ypqE 2382254..2382760 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  KJP55_RS12405 (NRS6118_12340) ypqA 2382898..2383317 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  KJP55_RS12410 (NRS6118_12345) yppG 2383338..2383715 (-) 378 WP_004398696.1 YppG family protein -
  KJP55_RS12415 (NRS6118_12350) yppF 2383903..2384091 (+) 189 WP_003230690.1 YppF family protein -
  KJP55_RS12420 (NRS6118_12355) yppE 2384130..2384501 (-) 372 WP_003246080.1 YppE family protein -
  KJP55_RS12425 (NRS6118_12360) yppD 2384547..2384792 (-) 246 WP_004398488.1 YppD family protein -
  KJP55_RS12430 (NRS6118_12365) sspM 2384991..2385095 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP55_RS12435 (NRS6118_12370) yppC 2385120..2386082 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  KJP55_RS12440 (NRS6118_12375) recU 2386123..2386743 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP55_RS12445 (NRS6118_12380) ponA 2386765..2389509 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  KJP55_RS12450 (NRS6118_12385) ypoC 2389585..2390079 (-) 495 WP_009967579.1 YpoC family protein -
  KJP55_RS12455 (NRS6118_12390) nth 2390076..2390735 (-) 660 WP_009967580.1 endonuclease III -
  KJP55_RS12460 (NRS6118_12395) dnaD 2390754..2391452 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1157331 KJP55_RS12440 WP_004399067.1 2386123..2386743(+) (recU) [Bacillus subtilis isolate NRS6118]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1157331 KJP55_RS12440 WP_004399067.1 2386123..2386743(+) (recU) [Bacillus subtilis isolate NRS6118]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment