Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   KJP64_RS19145 Genome accession   NZ_OX419565
Coordinates   3703391..3704536 (+) Length   381 a.a.
NCBI ID   WP_029318693.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6145     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3698391..3709536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP64_RS19125 (NRS6145_18870) albF 3698407..3699687 (+) 1281 WP_029318696.1 pitrilysin family protein -
  KJP64_RS19130 (NRS6145_18875) albG 3699684..3700385 (+) 702 WP_213379752.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  KJP64_RS19135 (NRS6145_18880) ywhL 3700391..3701767 (-) 1377 WP_213379750.1 YncE family protein -
  KJP64_RS19140 (NRS6145_18885) ywhK 3701806..3703161 (-) 1356 WP_015250986.1 YncE family protein -
  KJP64_RS21615 - 3703158..3703388 (-) 231 WP_041334639.1 hypothetical protein -
  KJP64_RS19145 (NRS6145_18890) rapF 3703391..3704536 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  KJP64_RS19150 (NRS6145_18895) phrF 3704520..3704639 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  KJP64_RS19155 (NRS6145_18900) - 3704892..3705371 (+) 480 WP_015714892.1 hypothetical protein -
  KJP64_RS19160 (NRS6145_18905) - 3705520..3706308 (+) 789 WP_015714893.1 membrane protein -
  KJP64_RS19165 (NRS6145_18910) - 3706295..3706969 (+) 675 WP_015714894.1 hypothetical protein -
  KJP64_RS19170 (NRS6145_18915) - 3706985..3707776 (+) 792 WP_250622481.1 hypothetical protein -
  KJP64_RS19175 (NRS6145_18920) - 3707779..3708426 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  KJP64_RS19180 (NRS6145_18925) - 3708419..3708979 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45594.05 Da        Isoelectric Point: 5.0624

>NTDB_id=1157198 KJP64_RS19145 WP_029318693.1 3703391..3704536(+) (rapF) [Bacillus subtilis isolate NRS6145]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=1157198 KJP64_RS19145 WP_029318693.1 3703391..3704536(+) (rapF) [Bacillus subtilis isolate NRS6145]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572

Multiple sequence alignment