Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KJP64_RS12580 Genome accession   NZ_OX419565
Coordinates   2449937..2450704 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis isolate NRS6145     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2444937..2455704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP64_RS12560 (NRS6145_12430) ppsR 2445112..2445924 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  KJP64_RS12565 (NRS6145_12435) ccpN 2445950..2446588 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  KJP64_RS12570 (NRS6145_12440) glyS 2446721..2448760 (-) 2040 WP_213394003.1 glycine--tRNA ligase subunit beta -
  KJP64_RS12575 (NRS6145_12445) glyQ 2448753..2449640 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KJP64_RS12580 (NRS6145_12450) recO 2449937..2450704 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  KJP64_RS12585 (NRS6145_12455) yqzL 2450741..2450884 (-) 144 WP_003230053.1 YqzL family protein -
  KJP64_RS12590 (NRS6145_12460) era 2451032..2451937 (-) 906 WP_003230051.1 GTPase Era -
  KJP64_RS12595 (NRS6145_12465) cdd 2451918..2452328 (-) 411 WP_032722130.1 cytidine deaminase -
  KJP64_RS12600 (NRS6145_12470) unpK 2452447..2452818 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  KJP64_RS12605 (NRS6145_12475) ybeY 2452799..2453272 (-) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  KJP64_RS12610 (NRS6145_12480) pgpH 2453273..2455408 (-) 2136 WP_110109423.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=1157173 KJP64_RS12580 WP_003230055.1 2449937..2450704(-) (recO) [Bacillus subtilis isolate NRS6145]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1157173 KJP64_RS12580 WP_003230055.1 2449937..2450704(-) (recO) [Bacillus subtilis isolate NRS6145]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment