Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KJP64_RS05635 Genome accession   NZ_OX419565
Coordinates   1088484..1089062 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis isolate NRS6145     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083484..1094062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP64_RS05615 (NRS6145_05550) hemAT 1083995..1085293 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  KJP64_RS05620 (NRS6145_05555) yhfW 1085432..1086961 (-) 1530 WP_129137558.1 FAD-dependent oxidoreductase -
  KJP64_RS05625 (NRS6145_05560) yhxC 1087073..1087930 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  KJP64_RS05630 (NRS6145_05565) yhzC 1087958..1088191 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KJP64_RS05635 (NRS6145_05570) comK 1088484..1089062 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  KJP64_RS05640 (NRS6145_05575) yhxD 1089109..1090008 (-) 900 WP_213379289.1 SDR family oxidoreductase -
  KJP64_RS05645 (NRS6145_05580) yhjA 1090222..1090491 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  KJP64_RS05650 (NRS6145_05585) yhjB 1090535..1092004 (-) 1470 WP_015252422.1 sodium:solute symporter -
  KJP64_RS05655 (NRS6145_05590) yhjC 1092001..1092201 (-) 201 WP_015252421.1 DUF3311 domain-containing protein -
  KJP64_RS05660 (NRS6145_05595) - 1092400..1092771 (-) 372 WP_014476361.1 hypothetical protein -
  KJP64_RS05665 (NRS6145_05600) yhjE 1092923..1093546 (+) 624 WP_010886465.1 VTT domain-containing protein -
  KJP64_RS05670 (NRS6145_05605) lepB 1093548..1094054 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1157142 KJP64_RS05635 WP_003245329.1 1088484..1089062(+) (comK) [Bacillus subtilis isolate NRS6145]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1157142 KJP64_RS05635 WP_003245329.1 1088484..1089062(+) (comK) [Bacillus subtilis isolate NRS6145]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment