Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KJP48_RS13665 Genome accession   NZ_OX419564
Coordinates   2599244..2600011 (-) Length   255 a.a.
NCBI ID   WP_153940200.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6127     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2594244..2605011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP48_RS13645 (NRS6127_13565) ppsR 2594418..2595230 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  KJP48_RS13650 (NRS6127_13570) ccpN 2595256..2595894 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  KJP48_RS13655 (NRS6127_13575) glyS 2596027..2598066 (-) 2040 WP_029726706.1 glycine--tRNA ligase subunit beta -
  KJP48_RS13660 (NRS6127_13580) glyQ 2598059..2598946 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KJP48_RS13665 (NRS6127_13585) recO 2599244..2600011 (-) 768 WP_153940200.1 DNA repair protein RecO Machinery gene
  KJP48_RS13670 (NRS6127_13590) yqzL 2600048..2600191 (-) 144 WP_003230053.1 YqzL family protein -
  KJP48_RS13675 (NRS6127_13595) era 2600339..2601244 (-) 906 WP_003230051.1 GTPase Era -
  KJP48_RS13680 (NRS6127_13600) cdd 2601225..2601635 (-) 411 WP_003230049.1 cytidine deaminase -
  KJP48_RS13685 (NRS6127_13605) unpK 2601754..2602125 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  KJP48_RS13690 (NRS6127_13610) ybeY 2602106..2602579 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  KJP48_RS13695 (NRS6127_13615) pgpH 2602580..2604715 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29274.97 Da        Isoelectric Point: 7.9590

>NTDB_id=1157089 KJP48_RS13665 WP_153940200.1 2599244..2600011(-) (recO) [Bacillus subtilis isolate NRS6127]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHCCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1157089 KJP48_RS13665 WP_153940200.1 2599244..2600011(-) (recO) [Bacillus subtilis isolate NRS6127]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACTGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment