Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C163_RS22115 Genome accession   NZ_CP007012
Coordinates   5022887..5024257 (-) Length   456 a.a.
NCBI ID   WP_003251626.1    Uniprot ID   I7AVL1
Organism   Pseudomonas sp. FGI182     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5017887..5029257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C163_RS22095 (C163_22480) - 5018110..5018307 (-) 198 WP_013974210.1 YbdD/YjiX family protein -
  C163_RS22100 (C163_22485) - 5018321..5020387 (-) 2067 WP_024087740.1 carbon starvation CstA family protein -
  C163_RS22105 (C163_22490) - 5020566..5020928 (+) 363 WP_025340638.1 PilZ domain-containing protein -
  C163_RS22110 (C163_22495) - 5021192..5022709 (+) 1518 WP_025340639.1 nucleobase:cation symporter-2 family protein -
  C163_RS22115 (C163_22500) radA 5022887..5024257 (-) 1371 WP_003251626.1 DNA repair protein RadA Machinery gene
  C163_RS22120 (C163_22505) mscL 5024435..5024854 (+) 420 WP_025340640.1 large-conductance mechanosensitive channel protein MscL -
  C163_RS22125 (C163_22510) - 5024990..5025766 (-) 777 WP_025340641.1 ferredoxin--NADP reductase -
  C163_RS22130 (C163_22515) - 5025979..5026686 (+) 708 WP_025340642.1 autoinducer binding domain-containing protein -
  C163_RS22135 (C163_22520) - 5026776..5027900 (+) 1125 WP_025340643.1 methyltransferase -
  C163_RS22140 (C163_22525) - 5028033..5028188 (-) 156 WP_008094148.1 DUF2474 domain-containing protein -
  C163_RS22145 (C163_22530) cydB 5028198..5029205 (-) 1008 WP_025340644.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48741.18 Da        Isoelectric Point: 6.8985

>NTDB_id=115700 C163_RS22115 WP_003251626.1 5022887..5024257(-) (radA) [Pseudomonas sp. FGI182]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=115700 C163_RS22115 WP_003251626.1 5022887..5024257(-) (radA) [Pseudomonas sp. FGI182]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGTGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGCGCCTGGAACACCTTGGTCGAAACCATGATCGAAAGCGGCGGTGCCGCTGCGCCCAGTAGCGGCCGTGCCGGCTGGA
CCGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGCTTCACCACCAGCAGCACCGAA
CTGGACCGCGTGCTGGGCGGTGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGTGACCCCGGCATCGGCAAGTCGAC
CATCCTGCTGCAGACCTTGTGCAACATTGCCGTGGGCATGCCGGCGCTGTACGTCACCGGCGAGGAGTCGCAGCAGCAGG
TGGCCATGCGCTCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAGACCATCATC
GCCACGGCCCGCGTCGAGAAACCGCGGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAGCTGCAATCGGC
ACCCGGCGGCGTGGCCCAGGTGCGCGAAAGCACGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTACTCGAGCACATGGTCGACACCGTGCTGTATTTC
GAGGGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGTGTGTT
CGGCATGACCGATCGTGGCCTGAAGGAGGTGTCCAACCCCTCGGCGATCTTCCTCAACCGCACCCAGGAGGAAGTACCGG
GCAGCGTGGTGATGGCGACCTGGGAGGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACGACAGCCACCTG
GCCAACCCGCGCCGGGTGACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCAGTGCTGCACCGCCACGGCGG
TATTCCCACCCATGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACCGCCTCGGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCCTGGCCCATGGCCTGCTGGTGTTTGGCGAGATCGGCCTGTCG
GGCGAGGTGCGGCCGGTGCCCAGTGGCCAGGAGCGTTTGAAGGAAGCCGCCAAGCATGGTTTCAAGCGGGCCATCGTGCC
CAAGGGCAATGCGCCGAAAGAGGCTCCGGCAGGGTTGCAGGTGATTGCCGTTACCCGGCTGGAGCAGGCCCTGGATGCGC
TGTTCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7AVL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461

Multiple sequence alignment