Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP68_RS11215 Genome accession   NZ_OX419559
Coordinates   2204287..2204907 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6099     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2199287..2209907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP68_RS11175 (NRS6099_11105) ypqE 2200415..2200921 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  KJP68_RS11180 (NRS6099_11110) ypqA 2201059..2201478 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  KJP68_RS11185 (NRS6099_11115) yppG 2201499..2201876 (-) 378 WP_015251832.1 YppG family protein -
  KJP68_RS11190 (NRS6099_11120) yppF 2202064..2202252 (+) 189 WP_003230690.1 YppF family protein -
  KJP68_RS11195 (NRS6099_11125) yppE 2202294..2202665 (-) 372 WP_029726786.1 YppE family protein -
  KJP68_RS11200 (NRS6099_11130) yppD 2202711..2202956 (-) 246 WP_015251831.1 YppD family protein -
  KJP68_RS11205 (NRS6099_11135) sspM 2203155..2203259 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP68_RS11210 (NRS6099_11140) yppC 2203284..2204246 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  KJP68_RS11215 (NRS6099_11145) recU 2204287..2204907 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP68_RS11220 (NRS6099_11150) ponA 2204929..2207673 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  KJP68_RS11225 (NRS6099_11155) ypoC 2207749..2208243 (-) 495 WP_029726783.1 YpoC family protein -
  KJP68_RS11230 (NRS6099_11160) nth 2208240..2208899 (-) 660 WP_029726782.1 endonuclease III -
  KJP68_RS11235 (NRS6099_11165) dnaD 2208918..2209616 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1156833 KJP68_RS11215 WP_004399067.1 2204287..2204907(+) (recU) [Bacillus subtilis isolate NRS6099]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1156833 KJP68_RS11215 WP_004399067.1 2204287..2204907(+) (recU) [Bacillus subtilis isolate NRS6099]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment