Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KJP72_RS19270 Genome accession   NZ_OX419557
Coordinates   3654753..3656144 (-) Length   463 a.a.
NCBI ID   WP_029725993.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6186     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3649753..3661144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP72_RS19235 (NRS6186_19090) flgL 3649924..3650820 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  KJP72_RS19240 (NRS6186_19095) flgK 3650831..3652354 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  KJP72_RS19245 (NRS6186_19100) flgN 3652373..3652855 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KJP72_RS19250 (NRS6186_19105) flgM 3652871..3653137 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP72_RS19255 (NRS6186_19110) yvyF 3653218..3653637 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP72_RS19260 (NRS6186_19115) comFC 3653711..3654433 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  KJP72_RS19265 (NRS6186_19120) comFB 3654397..3654693 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP72_RS19270 (NRS6186_19125) comFA 3654753..3656144 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  KJP72_RS19275 (NRS6186_19130) fakBA 3656250..3657095 (-) 846 WP_003227986.1 DegV family protein -
  KJP72_RS19280 (NRS6186_19135) degU 3657193..3657882 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP72_RS19285 (NRS6186_19140) degS 3657965..3659122 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP72_RS19290 (NRS6186_19145) yvyE 3659339..3659992 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52575.62 Da        Isoelectric Point: 9.9619

>NTDB_id=1156785 KJP72_RS19270 WP_029725993.1 3654753..3656144(-) (comFA) [Bacillus subtilis isolate NRS6186]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNKLAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1156785 KJP72_RS19270 WP_029725993.1 3654753..3656144(-) (comFA) [Bacillus subtilis isolate NRS6186]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCCTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATA
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.136

100

0.991

Multiple sequence alignment