Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP72_RS12210 Genome accession   NZ_OX419557
Coordinates   2338663..2339283 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6186     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2333663..2344283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP72_RS12170 (NRS6186_12140) ypqE 2334794..2335300 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  KJP72_RS12175 (NRS6186_12145) ypqA 2335438..2335857 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  KJP72_RS12180 (NRS6186_12150) yppG 2335878..2336255 (-) 378 WP_004398696.1 YppG family protein -
  KJP72_RS12185 (NRS6186_12155) yppF 2336443..2336631 (+) 189 WP_140599951.1 YppF family protein -
  KJP72_RS12190 (NRS6186_12160) yppE 2336670..2337041 (-) 372 WP_003246080.1 YppE family protein -
  KJP72_RS12195 (NRS6186_12165) yppD 2337087..2337332 (-) 246 WP_004398488.1 YppD family protein -
  KJP72_RS12200 (NRS6186_12170) sspM 2337531..2337635 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP72_RS12205 (NRS6186_12175) yppC 2337660..2338622 (-) 963 WP_080529462.1 DUF2515 domain-containing protein -
  KJP72_RS12210 (NRS6186_12180) recU 2338663..2339283 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP72_RS12215 (NRS6186_12185) ponA 2339305..2342049 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  KJP72_RS12220 (NRS6186_12190) ypoC 2342125..2342619 (-) 495 WP_029726783.1 YpoC family protein -
  KJP72_RS12225 (NRS6186_12195) nth 2342616..2343275 (-) 660 WP_029726782.1 endonuclease III -
  KJP72_RS12230 (NRS6186_12200) dnaD 2343294..2343992 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1156754 KJP72_RS12210 WP_004399067.1 2338663..2339283(+) (recU) [Bacillus subtilis isolate NRS6186]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1156754 KJP72_RS12210 WP_004399067.1 2338663..2339283(+) (recU) [Bacillus subtilis isolate NRS6186]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment