Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KJP72_RS05655 Genome accession   NZ_OX419557
Coordinates   1093615..1094193 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6186     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088615..1099193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP72_RS05635 (NRS6186_05595) hemAT 1089126..1090424 (-) 1299 WP_144527227.1 heme-based aerotactic transducer HemAT -
  KJP72_RS05640 (NRS6186_05600) yhfW 1090563..1092092 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  KJP72_RS05645 (NRS6186_05605) yhxC 1092204..1093061 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  KJP72_RS05650 (NRS6186_05610) yhzC 1093089..1093322 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KJP72_RS05655 (NRS6186_05615) comK 1093615..1094193 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  KJP72_RS05660 (NRS6186_05620) yhxD 1094240..1095139 (-) 900 WP_144527230.1 SDR family oxidoreductase -
  KJP72_RS05665 (NRS6186_05625) yhjA 1095356..1095625 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  KJP72_RS05670 (NRS6186_05630) yhjB 1095669..1097138 (-) 1470 WP_024571729.1 sodium:solute symporter -
  KJP72_RS05675 (NRS6186_05635) yhjC 1097135..1097335 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  KJP72_RS05680 (NRS6186_05640) - 1097543..1097905 (-) 363 WP_024571727.1 hypothetical protein -
  KJP72_RS05685 (NRS6186_05645) yhjE 1098057..1098680 (+) 624 WP_010886465.1 VTT domain-containing protein -
  KJP72_RS05690 (NRS6186_05650) lepB 1098682..1099188 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=1156735 KJP72_RS05655 WP_029317573.1 1093615..1094193(+) (comK) [Bacillus subtilis isolate NRS6186]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1156735 KJP72_RS05655 WP_029317573.1 1093615..1094193(+) (comK) [Bacillus subtilis isolate NRS6186]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCACTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment