Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KJP65_RS19120 Genome accession   NZ_OX419555
Coordinates   3607122..3607811 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate NRS6181     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3602122..3612811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP65_RS19085 (NRS6181_18950) flgN 3602302..3602784 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KJP65_RS19090 (NRS6181_18955) flgM 3602800..3603066 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP65_RS19095 (NRS6181_18960) yvyF 3603147..3603566 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP65_RS19100 (NRS6181_18965) comFC 3603640..3604362 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  KJP65_RS19105 (NRS6181_18970) comFB 3604326..3604622 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP65_RS19110 (NRS6181_18975) comFA 3604682..3606073 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  KJP65_RS19115 (NRS6181_18980) fakBA 3606179..3607024 (-) 846 WP_003227986.1 DegV family protein -
  KJP65_RS19120 (NRS6181_18985) degU 3607122..3607811 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP65_RS19125 (NRS6181_18990) degS 3607894..3609051 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP65_RS19130 (NRS6181_18995) yvyE 3609268..3609921 (+) 654 WP_003227979.1 YigZ family protein -
  KJP65_RS19135 (NRS6181_19000) tagV 3609921..3611096 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  KJP65_RS19140 (NRS6181_19005) tagO 3611169..3612245 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1156707 KJP65_RS19120 WP_003219701.1 3607122..3607811(-) (degU) [Bacillus subtilis isolate NRS6181]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1156707 KJP65_RS19120 WP_003219701.1 3607122..3607811(-) (degU) [Bacillus subtilis isolate NRS6181]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment