Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP65_RS11485 Genome accession   NZ_OX419555
Coordinates   2214427..2215047 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6181     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2209427..2220047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP65_RS11445 (NRS6181_11400) ypqE 2210558..2211064 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  KJP65_RS11450 (NRS6181_11405) ypqA 2211202..2211621 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  KJP65_RS11455 (NRS6181_11410) yppG 2211642..2212019 (-) 378 WP_004398696.1 YppG family protein -
  KJP65_RS11460 (NRS6181_11415) yppF 2212207..2212395 (+) 189 WP_140599951.1 YppF family protein -
  KJP65_RS11465 (NRS6181_11420) yppE 2212434..2212805 (-) 372 WP_003246080.1 YppE family protein -
  KJP65_RS11470 (NRS6181_11425) yppD 2212851..2213096 (-) 246 WP_004398488.1 YppD family protein -
  KJP65_RS11475 (NRS6181_11430) sspM 2213295..2213399 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP65_RS11480 (NRS6181_11435) yppC 2213424..2214386 (-) 963 WP_080529462.1 DUF2515 domain-containing protein -
  KJP65_RS11485 (NRS6181_11440) recU 2214427..2215047 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP65_RS11490 (NRS6181_11445) ponA 2215069..2217813 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  KJP65_RS11495 (NRS6181_11450) ypoC 2217889..2218383 (-) 495 WP_029726783.1 YpoC family protein -
  KJP65_RS11500 (NRS6181_11455) nth 2218380..2219039 (-) 660 WP_029726782.1 endonuclease III -
  KJP65_RS11505 (NRS6181_11460) dnaD 2219058..2219756 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1156675 KJP65_RS11485 WP_004399067.1 2214427..2215047(+) (recU) [Bacillus subtilis isolate NRS6181]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1156675 KJP65_RS11485 WP_004399067.1 2214427..2215047(+) (recU) [Bacillus subtilis isolate NRS6181]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment