Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP77_RS12175 Genome accession   NZ_OX419554
Coordinates   2338369..2338989 (+) Length   206 a.a.
NCBI ID   WP_088467249.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6160     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2333369..2343989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP77_RS12135 (NRS6160_11990) ypqE 2334500..2335006 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  KJP77_RS12140 (NRS6160_11995) ypqA 2335144..2335563 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  KJP77_RS12145 (NRS6160_12000) yppG 2335584..2335961 (-) 378 WP_014477159.1 YppG family protein -
  KJP77_RS12150 (NRS6160_12005) yppF 2336149..2336337 (+) 189 WP_003230690.1 YppF family protein -
  KJP77_RS12155 (NRS6160_12010) yppE 2336376..2336747 (-) 372 WP_015714151.1 YppE family protein -
  KJP77_RS12160 (NRS6160_12015) yppD 2336793..2337038 (-) 246 WP_015251831.1 YppD family protein -
  KJP77_RS12165 sspM 2337237..2337341 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP77_RS12170 (NRS6160_12020) yppC 2337366..2338328 (-) 963 WP_029878384.1 DUF2515 domain-containing protein -
  KJP77_RS12175 (NRS6160_12025) recU 2338369..2338989 (+) 621 WP_088467249.1 Holliday junction resolvase RecU Machinery gene
  KJP77_RS12180 (NRS6160_12030) ponA 2339011..2341755 (+) 2745 WP_088467250.1 PBP1A family penicillin-binding protein -
  KJP77_RS12185 (NRS6160_12035) ypoC 2341831..2342325 (-) 495 WP_015714154.1 YpoC family protein -
  KJP77_RS12190 (NRS6160_12040) nth 2342322..2342981 (-) 660 WP_009967580.1 endonuclease III -
  KJP77_RS12195 (NRS6160_12045) dnaD 2343000..2343698 (-) 699 WP_015714155.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23986.11 Da        Isoelectric Point: 9.6240

>NTDB_id=1156596 KJP77_RS12175 WP_088467249.1 2338369..2338989(+) (recU) [Bacillus subtilis isolate NRS6160]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYINIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1156596 KJP77_RS12175 WP_088467249.1 2338369..2338989(+) (recU) [Bacillus subtilis isolate NRS6160]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAATATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment