Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KJP78_RS19425 Genome accession   NZ_OX419553
Coordinates   3682688..3684079 (-) Length   463 a.a.
NCBI ID   WP_213416687.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6183     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3677688..3689079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS19390 (NRS6183_19225) flgL 3677859..3678755 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  KJP78_RS19395 (NRS6183_19230) flgK 3678766..3680289 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  KJP78_RS19400 (NRS6183_19235) flgN 3680308..3680790 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KJP78_RS19405 (NRS6183_19240) flgM 3680806..3681072 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP78_RS19410 (NRS6183_19245) yvyF 3681153..3681572 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP78_RS19415 (NRS6183_19250) comFC 3681646..3682368 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  KJP78_RS19420 (NRS6183_19255) comFB 3682332..3682628 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP78_RS19425 (NRS6183_19260) comFA 3682688..3684079 (-) 1392 WP_213416687.1 ATP-dependent helicase ComFA Machinery gene
  KJP78_RS19430 (NRS6183_19265) fakBA 3684185..3685030 (-) 846 WP_003227986.1 DegV family protein -
  KJP78_RS19435 (NRS6183_19270) degU 3685128..3685817 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP78_RS19440 (NRS6183_19275) degS 3685900..3687057 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP78_RS19445 (NRS6183_19280) yvyE 3687274..3687927 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52541.60 Da        Isoelectric Point: 9.9619

>NTDB_id=1156548 KJP78_RS19425 WP_213416687.1 3682688..3684079(-) (comFA) [Bacillus subtilis isolate NRS6183]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSLSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNKLAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1156548 KJP78_RS19425 WP_213416687.1 3682688..3684079(-) (comFA) [Bacillus subtilis isolate NRS6183]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTATCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCCTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATA
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.92

100

0.989

Multiple sequence alignment