Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KJP78_RS15510 Genome accession   NZ_OX419553
Coordinates   2906674..2907420 (-) Length   248 a.a.
NCBI ID   WP_088467305.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6183     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2901674..2912420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS15485 (NRS6183_15365) mreC 2902080..2902952 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  KJP78_RS15490 (NRS6183_15370) mreB 2902983..2903996 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  KJP78_RS15495 (NRS6183_15375) radC 2904088..2904783 (-) 696 WP_014480455.1 DNA repair protein RadC -
  KJP78_RS15500 (NRS6183_15380) maf 2904820..2905389 (-) 570 WP_088467303.1 Maf family nucleotide pyrophosphatase -
  KJP78_RS15505 (NRS6183_15385) spoIIB 2905542..2906540 (-) 999 WP_088467304.1 stage II sporulation protein SpoIIB -
  KJP78_RS15510 (NRS6183_15390) comC 2906674..2907420 (-) 747 WP_088467305.1 A24 family peptidase Machinery gene
  KJP78_RS15515 (NRS6183_15395) folC 2907560..2908852 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KJP78_RS15520 (NRS6183_15400) valS 2908912..2911554 (-) 2643 WP_085187377.1 valine--tRNA ligase -
  KJP78_RS15525 (NRS6183_15405) - 2912002..2912193 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26455.05 Da        Isoelectric Point: 9.7944

>NTDB_id=1156535 KJP78_RS15510 WP_088467305.1 2906674..2907420(-) (comC) [Bacillus subtilis isolate NRS6183]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1156535 KJP78_RS15510 WP_088467305.1 2906674..2907420(-) (comC) [Bacillus subtilis isolate NRS6183]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCACTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment