Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KJP78_RS13890 Genome accession   NZ_OX419553
Coordinates   2634409..2635176 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis isolate NRS6183     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2629409..2640176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS13870 (NRS6183_13795) ppsR 2629583..2630395 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  KJP78_RS13875 (NRS6183_13800) ccpN 2630421..2631059 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  KJP78_RS13880 (NRS6183_13805) glyS 2631192..2633231 (-) 2040 WP_029726706.1 glycine--tRNA ligase subunit beta -
  KJP78_RS13885 (NRS6183_13810) glyQ 2633224..2634111 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KJP78_RS13890 (NRS6183_13815) recO 2634409..2635176 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  KJP78_RS13895 (NRS6183_13820) yqzL 2635213..2635356 (-) 144 WP_003230053.1 YqzL family protein -
  KJP78_RS13900 (NRS6183_13825) era 2635504..2636409 (-) 906 WP_003230051.1 GTPase Era -
  KJP78_RS13905 (NRS6183_13830) cdd 2636390..2636800 (-) 411 WP_003230049.1 cytidine deaminase -
  KJP78_RS13910 (NRS6183_13835) unpK 2636919..2637290 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  KJP78_RS13915 (NRS6183_13840) ybeY 2637271..2637744 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  KJP78_RS13920 (NRS6183_13845) pgpH 2637745..2639880 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=1156527 KJP78_RS13890 WP_003230055.1 2634409..2635176(-) (recO) [Bacillus subtilis isolate NRS6183]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1156527 KJP78_RS13890 WP_003230055.1 2634409..2635176(-) (recO) [Bacillus subtilis isolate NRS6183]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment