Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KJP78_RS13360 Genome accession   NZ_OX419553
Coordinates   2544502..2545305 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6183     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2539502..2550305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS13335 (NRS6183_13255) glpQ 2540640..2541371 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  KJP78_RS13340 (NRS6183_13260) yqiI 2541450..2542070 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  KJP78_RS13345 (NRS6183_13265) - 2542090..2542386 (-) 297 WP_014480225.1 hypothetical protein -
  KJP78_RS13350 - 2542694..2542846 (+) 153 WP_014480226.1 hypothetical protein -
  KJP78_RS13355 (NRS6183_13270) yqiG 2542919..2544037 (+) 1119 WP_029726733.1 NADH-dependent flavin oxidoreductase -
  KJP78_RS13360 (NRS6183_13280) spo0A 2544502..2545305 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  KJP78_RS13365 (NRS6183_13285) spoIVB 2545581..2546861 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  KJP78_RS13370 (NRS6183_13290) recN 2547036..2548766 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  KJP78_RS13375 (NRS6183_13295) argR 2548803..2549252 (-) 450 WP_003230265.1 arginine repressor ArgR -
  KJP78_RS13380 (NRS6183_13300) yqxC 2549350..2550195 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1156516 KJP78_RS13360 WP_003226427.1 2544502..2545305(-) (spo0A) [Bacillus subtilis isolate NRS6183]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1156516 KJP78_RS13360 WP_003226427.1 2544502..2545305(-) (spo0A) [Bacillus subtilis isolate NRS6183]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCTGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment