Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP78_RS12370 Genome accession   NZ_OX419553
Coordinates   2367474..2368094 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6183     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2362474..2373094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS12330 (NRS6183_12265) ypqE 2363602..2364108 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  KJP78_RS12335 (NRS6183_12270) ypqA 2364246..2364665 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  KJP78_RS12340 (NRS6183_12275) yppG 2364686..2365063 (-) 378 WP_015251832.1 YppG family protein -
  KJP78_RS12345 (NRS6183_12280) yppF 2365251..2365439 (+) 189 WP_003230690.1 YppF family protein -
  KJP78_RS12350 (NRS6183_12285) yppE 2365481..2365852 (-) 372 WP_029726786.1 YppE family protein -
  KJP78_RS12355 (NRS6183_12290) yppD 2365898..2366143 (-) 246 WP_015251831.1 YppD family protein -
  KJP78_RS12360 sspM 2366342..2366446 (+) 105 WP_213416734.1 acid-soluble spore protein SspM -
  KJP78_RS12365 (NRS6183_12295) yppC 2366471..2367433 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  KJP78_RS12370 (NRS6183_12300) recU 2367474..2368094 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP78_RS12375 (NRS6183_12305) ponA 2368116..2370860 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  KJP78_RS12380 (NRS6183_12310) ypoC 2370936..2371430 (-) 495 WP_029726783.1 YpoC family protein -
  KJP78_RS12385 (NRS6183_12315) nth 2371427..2372086 (-) 660 WP_029726782.1 endonuclease III -
  KJP78_RS12390 (NRS6183_12320) dnaD 2372105..2372803 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1156515 KJP78_RS12370 WP_004399067.1 2367474..2368094(+) (recU) [Bacillus subtilis isolate NRS6183]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1156515 KJP78_RS12370 WP_004399067.1 2367474..2368094(+) (recU) [Bacillus subtilis isolate NRS6183]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment