Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP69_RS11220 Genome accession   NZ_OX419550
Coordinates   2204289..2204909 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6187     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2199289..2209909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP69_RS11180 (NRS6187_11105) ypqE 2200417..2200923 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  KJP69_RS11185 (NRS6187_11110) ypqA 2201061..2201480 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  KJP69_RS11190 (NRS6187_11115) yppG 2201501..2201878 (-) 378 WP_015251832.1 YppG family protein -
  KJP69_RS11195 (NRS6187_11120) yppF 2202066..2202254 (+) 189 WP_003230690.1 YppF family protein -
  KJP69_RS11200 (NRS6187_11125) yppE 2202296..2202667 (-) 372 WP_029726786.1 YppE family protein -
  KJP69_RS11205 (NRS6187_11130) yppD 2202713..2202958 (-) 246 WP_015251831.1 YppD family protein -
  KJP69_RS11210 sspM 2203157..2203261 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP69_RS11215 (NRS6187_11135) yppC 2203286..2204248 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  KJP69_RS11220 (NRS6187_11140) recU 2204289..2204909 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP69_RS11225 (NRS6187_11145) ponA 2204931..2207675 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  KJP69_RS11230 (NRS6187_11150) ypoC 2207751..2208245 (-) 495 WP_029726783.1 YpoC family protein -
  KJP69_RS11235 (NRS6187_11155) nth 2208242..2208901 (-) 660 WP_029726782.1 endonuclease III -
  KJP69_RS11240 (NRS6187_11160) dnaD 2208920..2209618 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1156350 KJP69_RS11220 WP_004399067.1 2204289..2204909(+) (recU) [Bacillus subtilis isolate NRS6187]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1156350 KJP69_RS11220 WP_004399067.1 2204289..2204909(+) (recU) [Bacillus subtilis isolate NRS6187]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment