Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   QMX76_RS21395 Genome accession   NZ_OX411213
Coordinates   799413..800510 (-) Length   365 a.a.
NCBI ID   WP_282251240.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 794413..805510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS21375 - 794434..794889 (-) 456 WP_005433465.1 Lrp/AsnC family transcriptional regulator -
  QMX76_RS21380 - 795039..795965 (+) 927 WP_282251233.1 DMT family transporter -
  QMX76_RS21385 - 796059..796721 (+) 663 WP_282251235.1 PilZ domain-containing protein -
  QMX76_RS21390 luxQ 796834..799413 (-) 2580 WP_282251238.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  QMX76_RS21395 luxP 799413..800510 (-) 1098 WP_282251240.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QMX76_RS21400 - 800752..802083 (-) 1332 WP_282248687.1 IS4 family transposase -
  QMX76_RS21405 - 802353..802667 (-) 315 WP_282251242.1 GIY-YIG nuclease family protein -
  QMX76_RS21410 - 802664..803317 (-) 654 WP_282251244.1 YceH family protein -
  QMX76_RS21415 - 803411..803614 (-) 204 WP_005433391.1 hypothetical protein -
  QMX76_RS21420 - 803853..804167 (+) 315 WP_005373603.1 DUF496 family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41437.76 Da        Isoelectric Point: 5.4779

>NTDB_id=1156303 QMX76_RS21395 WP_282251240.1 799413..800510(-) (luxP) [Vibrio campbellii isolate BF5_0283]
MKKALLFSLISMVGFSPASQATQVLNGYWGYQEFLDEFPEQRNLTNALSEAVREQPVPLSKPTKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEDKPVPTVYSGDFEVVTKADSPERIEALKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1156303 QMX76_RS21395 WP_282251240.1 799413..800510(-) (luxP) [Vibrio campbellii isolate BF5_0283]
ATGAAGAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTTTCTCCAGCGTCTCAAGCAACACAAGTTTTGAATGG
GTACTGGGGTTATCAAGAGTTTTTGGACGAATTTCCCGAGCAACGAAATCTCACCAATGCTTTATCAGAAGCAGTACGAG
AACAGCCGGTCCCACTGTCTAAACCGACAAAACGCCCACTCAAAATATCAGTGGTTTACCCAGGGCAGCAAGTTTCAGAT
TACTGGGTAAGAAATATTGCAGCATTCGAAAAACGTTTGGATAAGCTGAATATTAACTACCAACTGAACCAAGTGTTTAC
TCGTCCAAATGCTGATATCAAGCAACAAAGCTTGTCACTAATGGAAGCGCTCAAGAGTAAATCGGATTACTTGATTTTCA
CGCTTGATACGACAAGACACCGTAAATTTGTTGAGCACGTTTTGGACTCAACGAATACCAAATTGATCTTGCAAAATATT
ACTACACCAGTCCGTGAGTGGGACAAACATCAACCGTTTTTATATGTTGGATTTGACCACGCAGAAGGCAGTCGTGAATT
GGCAACAGAATTCGGAAAGTTCTTCCCAAAACACACATATTACAGTGTGCTCTACTTTTCTGAAGGTTATATTAGCGACG
TGAGAGGTGATACTTTTATTCACCAAGTAAACCGTGATAATAACTTTGAGCTACAATCAGCGTATTACACGAAGGCAACC
AAGCAATCCGGCTATGATGCTGCGAAAGCGAGTTTAGCAAAACATCCAGATGTTGATTTTATCTATGCATGTTCGACCGA
TGTGGCATTGGGCGCAGTAGACGCACTTGCCGAGTTGGGACGTGAAGACATTATGATCAATGGCTGGGGTGGAGGCTCTG
CTGAGTTAGACGCTATCCAGAAGGGTGATTTAGACATCACCGTCATGCGTATGAATGATGACACTGGCATAGCCATGGCA
GAAGCGATTAAGTGGGACTTGGAAGATAAACCAGTTCCGACCGTATACTCAGGTGACTTTGAAGTCGTAACAAAGGCAGA
TTCACCGGAGAGAATCGAAGCGCTGAAAAAGCGCGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.736

99.726

0.636

Multiple sequence alignment