Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QMX76_RS18255 Genome accession   NZ_OX411213
Coordinates   84332..85633 (-) Length   433 a.a.
NCBI ID   WP_282250495.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 79332..90633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS18240 - 80339..80887 (+) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  QMX76_RS18245 - 81259..81876 (-) 618 WP_282250494.1 HAD family phosphatase -
  QMX76_RS18250 cqsS 82180..84225 (+) 2046 WP_282252686.1 hybrid sensor histidine kinase/response regulator Regulator
  QMX76_RS18255 cqsA 84332..85633 (-) 1302 WP_282250495.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QMX76_RS18260 ylqF 85923..86858 (-) 936 WP_282250496.1 ribosome biogenesis GTPase YlqF -
  QMX76_RS18265 - 87507..89501 (+) 1995 WP_282250497.1 hypothetical protein -
  QMX76_RS18270 - 89631..89729 (-) 99 Protein_66 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48882.80 Da        Isoelectric Point: 6.4001

>NTDB_id=1156301 QMX76_RS18255 WP_282250495.1 84332..85633(-) (cqsA) [Vibrio campbellii isolate BF5_0283]
MRSLQAHANLCNLTNDTELILVKLYSCQRWRFPVLRRELIMSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDDSKPAFETQLAEYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTEQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=1156301 QMX76_RS18255 WP_282250495.1 84332..85633(-) (cqsA) [Vibrio campbellii isolate BF5_0283]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACACCGAGCTCATATTGGTCAAACTATATAGCTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCG
TGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGAGTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATTTCTTTGCACACATGTCTTTGTGGGAAGGCATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAAATACAGCGTCACGGCTCTGGCGTTA
TCGTTGTGGATTCAGTCTATAGCACGATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACCCATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTGGAACT
CACTGAGCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGCGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCATCTTTAGTTCGACGGTCCTTCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTCGAAGCGCAGATGATAAGCGAACCATGCTGTTCAACCGCGCTAAGGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAGTGCGGTAGTGAGCGAAATACGGAAC
GAGTGCGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

90.069

0.515

Multiple sequence alignment