Detailed information NTG1156282

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: QMX76_RS10615
• Genome accession: NZ_OX411212
• Coordinates: 2111487..2112908 (+)
• Length: 473 a.a.
• NCBI ID: WP_162092596.1
• Uniprot ID: -
• Organism: Vibrio campbellii isolate BF5_0283
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2106487..2117908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMX76_RS10595	-	2106884..2107495 (-)	612	WP_282249324.1	flavin reductase family protein	-
QMX76_RS10600	-	2108161..2108856 (+)	696	WP_282249325.1	NAD(P)H-binding protein	-
QMX76_RS10605	-	2109050..2110423 (+)	1374	WP_162092594.1	L-cystine transporter	-
QMX76_RS10610	-	2110645..2111325 (+)	681	WP_162092595.1	DUF1826 domain-containing protein	-
QMX76_RS10615	sbcB	2111487..2112908 (+)	1422	WP_162092596.1	exodeoxyribonuclease I	Machinery gene
QMX76_RS10620	-	2112967..2113341 (+)	375	WP_012127845.1	CidA/LrgA family protein	-
QMX76_RS10625	-	2113343..2114020 (+)	678	WP_005428010.1	LrgB family protein	-
QMX76_RS10630	cdd	2114285..2115172 (+)	888	WP_005427951.1	cytidine deaminase	-
QMX76_RS10635	-	2115236..2115934 (-)	699	WP_050905665.1	hypothetical protein	-
QMX76_RS10640	purT	2116143..2117318 (+)	1176	WP_282249326.1	formate-dependent phosphoribosylglycinamide formyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54501.77 Da
• Isoelectric Point: 4.9269

>NTDB_id=1156282 QMX76_RS10615 WP_162092596.1 2111487..2112908(+) (sbcB) [Vibrio campbellii isolate BF5_0283]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPES
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=1156282 QMX76_RS10615 WP_162092596.1 2111487..2112908(+) (sbcB) [Vibrio campbellii isolate BF5_0283]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAATCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCCTTGATGCACGTCTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAAGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCAATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACTCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTTGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.281	100	0.793