Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QMX76_RS05390 Genome accession   NZ_OX411212
Coordinates   1162231..1163634 (+) Length   467 a.a.
NCBI ID   WP_038889850.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157231..1168634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS05370 - 1157256..1158587 (+) 1332 WP_282248862.1 excinuclease ABC subunit B -
  QMX76_RS05375 - 1158607..1159047 (+) 441 WP_282248863.1 hypothetical protein -
  QMX76_RS05385 uvrB 1159858..1161888 (+) 2031 WP_005531398.1 excinuclease ABC subunit UvrB -
  QMX76_RS05390 luxO 1162231..1163634 (+) 1404 WP_038889850.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QMX76_RS05395 luxU 1163631..1163975 (+) 345 WP_045400708.1 quorum-sensing phosphorelay protein LuxU -
  QMX76_RS05400 - 1164091..1164984 (-) 894 WP_005531401.1 YvcK family protein -
  QMX76_RS05405 moaA 1165282..1166271 (+) 990 WP_050909394.1 GTP 3',8-cyclase MoaA -
  QMX76_RS05410 moaB 1166372..1166884 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  QMX76_RS05415 moaC 1166911..1167387 (+) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  QMX76_RS05420 moaD 1167387..1167644 (+) 258 WP_134977429.1 molybdopterin synthase sulfur carrier subunit -
  QMX76_RS05425 moaE 1167646..1168101 (+) 456 WP_010645711.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52154.68 Da        Isoelectric Point: 5.8849

>NTDB_id=1156280 QMX76_RS05390 WP_038889850.1 1162231..1163634(+) (luxO) [Vibrio campbellii isolate BF5_0283]
MQQMTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=1156280 QMX76_RS05390 WP_038889850.1 1162231..1163634(+) (luxO) [Vibrio campbellii isolate BF5_0283]
ATGCAACAAATGACAGAAGGTCAAAAGTCTCGTTATCTACTTATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATCCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACTGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGCCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAGGCAGACCGTTTACGTGTCACGGTGAACAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTATCGCACC
ATTGACTCTGCTGCGAGCAGTAAGGCGAGTATTTTTATTACTGGTGAAAGTGGCACGGGTAAAGAAGTGTGTGCGGAGGC
GATTCACGCAGCAAGTAAGCGTGGAGATAAGCCGTTTATCGCCATCAACTGTGCAGCAATTCCGAAAGACCTTATTGAAA
GTGAACTGTTTGGTCACGTAAAAGGTGCTTTCACCGGTGCGGCTAATGATCGACAAGGTGCGGCAGAACTGGCTGATGGC
GGCACGCTGTTCCTTGATGAGCTGTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGACGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAACGATTCAACAGCTACGAATGGCCAGGTAACGTTCGCCAGTTGCAAAACGTATTACGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGCTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATCATGACGGTATCAGATATTATGCCGCTTTGGATGACGGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTCAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment