Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMX76_RS03010 Genome accession   NZ_OX411212
Coordinates   625927..626445 (+) Length   172 a.a.
NCBI ID   WP_005426655.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 620927..631445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS03000 gshA 623644..625212 (+) 1569 WP_282248678.1 glutamate--cysteine ligase -
  QMX76_RS03005 - 625232..625837 (+) 606 WP_005438049.1 hypothetical protein -
  QMX76_RS03010 luxS 625927..626445 (+) 519 WP_005426655.1 S-ribosylhomocysteine lyase Regulator
  QMX76_RS03015 - 626535..627809 (-) 1275 WP_005426658.1 CNNM domain-containing protein -
  QMX76_RS03020 - 627965..628759 (-) 795 WP_005426660.1 inner membrane protein YpjD -
  QMX76_RS03025 ffh 628973..630355 (+) 1383 WP_005462555.1 signal recognition particle protein -
  QMX76_RS03030 rpsP 630566..630814 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  QMX76_RS03035 rimM 630842..631390 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19059.82 Da        Isoelectric Point: 4.7297

>NTDB_id=1156273 QMX76_RS03010 WP_005426655.1 625927..626445(+) (luxS) [Vibrio campbellii isolate BF5_0283]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1156273 QMX76_RS03010 WP_005426655.1 625927..626445(+) (luxS) [Vibrio campbellii isolate BF5_0283]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCGGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCAGC
GATGGAAGACGTACTAAAAGTAGAAAGCCAAAACAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATTGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment