Detailed information NTG1156270

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMX76_RS02835
• Genome accession: NZ_OX411212
• Coordinates: 595559..596545 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii isolate BF5_0283
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 590559..601545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMX76_RS02800	ftsB	590565..590846 (+)	282	WP_282248662.1	cell division protein FtsB	-
QMX76_RS02805	ispD	590848..591558 (+)	711	WP_282248663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMX76_RS02810	ispF	591573..592049 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMX76_RS02815	truD	592095..593138 (+)	1044	WP_282248664.1	tRNA pseudouridine(13) synthase TruD	-
QMX76_RS02820	surE	593138..593914 (+)	777	WP_282248665.1	5'/3'-nucleotidase SurE	-
QMX76_RS02825	-	593914..594540 (+)	627	WP_282248666.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMX76_RS02830	-	594555..595478 (+)	924	WP_282248667.1	peptidoglycan DD-metalloendopeptidase family protein	-
QMX76_RS02835	rpoS	595559..596545 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
QMX76_RS02840	mutS	596634..599195 (-)	2562	WP_282248668.1	DNA mismatch repair protein MutS	-
QMX76_RS02845	pncC	599281..599763 (+)	483	WP_005425360.1	nicotinamide-nucleotide amidase	-
QMX76_RS02850	recA	599964..601007 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=1156270 QMX76_RS02835 WP_005425361.1 595559..596545(+) (rpoS) [Vibrio campbellii isolate BF5_0283]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1156270 QMX76_RS02835 WP_005425361.1 595559..596545(+) (rpoS) [Vibrio campbellii isolate BF5_0283]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCGGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857