Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | QMX76_RS01630 | Genome accession | NZ_OX411212 |
| Coordinates | 345382..345957 (+) | Length | 191 a.a. |
| NCBI ID | WP_005432710.1 | Uniprot ID | - |
| Organism | Vibrio campbellii isolate BF5_0283 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 340382..350957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMX76_RS01615 | oxyR | 340650..341558 (+) | 909 | WP_005432705.1 | DNA-binding transcriptional regulator OxyR | - |
| QMX76_RS01620 | - | 341636..344203 (-) | 2568 | WP_038889585.1 | PBP1A family penicillin-binding protein | - |
| QMX76_RS01625 | pilM | 344382..345398 (+) | 1017 | WP_005432712.1 | type IV pilus assembly protein PilM | Machinery gene |
| QMX76_RS01630 | pilN | 345382..345957 (+) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| QMX76_RS01635 | pilO | 345950..346543 (+) | 594 | WP_005432718.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| QMX76_RS01640 | pilP | 346533..347048 (+) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| QMX76_RS01645 | pilQ | 347083..348825 (+) | 1743 | WP_050906101.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| QMX76_RS01650 | aroK | 349014..349532 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| QMX76_RS01655 | aroB | 349564..350664 (+) | 1101 | WP_282248580.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22194.53 Da Isoelectric Point: 9.4267
>NTDB_id=1156261 QMX76_RS01630 WP_005432710.1 345382..345957(+) (pilN) [Vibrio campbellii isolate BF5_0283]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=1156261 QMX76_RS01630 WP_005432710.1 345382..345957(+) (pilN) [Vibrio campbellii isolate BF5_0283]
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTTGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGTAATAAAACCACTGAGTTTATGAACCTGATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCCGCCAAGCTGCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAGGGAGG
TAAGCAGCATGGTTAA
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTTGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGTAATAAAACCACTGAGTTTATGAACCTGATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCCGCCAAGCTGCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAGGGAGG
TAAGCAGCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
99.476 |
100 |
0.995 |
| pilN | Vibrio cholerae strain A1552 |
60.452 |
92.67 |
0.56 |