Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   RG31_RS00565 Genome accession   NZ_CP010129
Coordinates   96746..97738 (-) Length   330 a.a.
NCBI ID   WP_073510378.1    Uniprot ID   -
Organism   Escherichia coli strain C9     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 91746..102738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG31_RS00555 (RG31_00500) yieP 94638..95330 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  RG31_RS00560 (RG31_00505) mdtD 95353..96780 (+) 1428 WP_073510376.1 multidrug transporter subunit MdtD -
  RG31_RS00565 (RG31_00510) cytR 96746..97738 (-) 993 WP_073510378.1 ribose operon transcriptional repressor RbsR Regulator
  RG31_RS00570 (RG31_00515) rbsK 97742..98671 (-) 930 WP_001300603.1 ribokinase -
  RG31_RS00575 (RG31_00520) rbsB 98797..99687 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  RG31_RS00580 (RG31_00525) rbsC 99712..100677 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  RG31_RS00585 (RG31_00530) rbsA 100682..102187 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  RG31_RS00590 (RG31_00535) rbsD 102195..102614 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36625.93 Da        Isoelectric Point: 5.2141

>NTDB_id=115563 RG31_RS00565 WP_073510378.1 96746..97738(-) (cytR) [Escherichia coli strain C9]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AIFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=115563 RG31_RS00565 WP_073510378.1 96746..97738(-) (cytR) [Escherichia coli strain C9]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCATCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.414

93.03

0.367