Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QNH80_RS06565 Genome accession   NZ_OX352996
Coordinates   1347676..1348389 (-) Length   237 a.a.
NCBI ID   WP_024393394.1    Uniprot ID   A0AAP6A155
Organism   Streptococcus suis isolate 861160_dhsdS     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342676..1353389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH80_RS06545 - 1343198..1343910 (-) 713 Protein_1283 GNAT family N-acetyltransferase -
  QNH80_RS06550 - 1343934..1346267 (-) 2334 WP_024405878.1 endonuclease MutS2 -
  QNH80_RS06555 - 1346762..1347310 (-) 549 WP_002935945.1 CvpA family protein -
  QNH80_RS06560 - 1347307..1347618 (-) 312 WP_002935948.1 hypothetical protein -
  QNH80_RS06565 treR 1347676..1348389 (-) 714 WP_024393394.1 trehalose operon repressor Regulator
  QNH80_RS06570 treP 1348622..1350616 (+) 1995 WP_074389394.1 PTS system trehalose-specific EIIBC component -
  QNH80_RS06575 treC 1350697..1352322 (+) 1626 WP_074389395.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27234.08 Da        Isoelectric Point: 6.7422

>NTDB_id=1155624 QNH80_RS06565 WP_024393394.1 1347676..1348389(-) (treR) [Streptococcus suis isolate 861160_dhsdS]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVFQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1155624 QNH80_RS06565 WP_024393394.1 1347676..1348389(-) (treR) [Streptococcus suis isolate 861160_dhsdS]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTGTTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTTGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTACGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511

Multiple sequence alignment