Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QNH80_RS00825 Genome accession   NZ_OX352996
Coordinates   166946..167749 (+) Length   267 a.a.
NCBI ID   WP_023369694.1    Uniprot ID   A0A822VJ97
Organism   Streptococcus suis isolate 861160_dhsdS     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 161946..172749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH80_RS00800 - 162375..163073 (-) 699 WP_015646621.1 amino acid ABC transporter permease -
  QNH80_RS00805 - 163088..163927 (-) 840 WP_023369690.1 transporter substrate-binding domain-containing protein -
  QNH80_RS00810 - 163938..164699 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  QNH80_RS00815 micA 164893..165597 (+) 705 WP_002935840.1 response regulator YycF Regulator
  QNH80_RS00820 micB 165590..166939 (+) 1350 WP_024405653.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QNH80_RS00825 vicX 166946..167749 (+) 804 WP_023369694.1 MBL fold metallo-hydrolase Regulator
  QNH80_RS00830 - 168111..168491 (+) 381 Protein_151 ATP-binding cassette domain-containing protein -
  QNH80_RS00835 pbp2b 168583..170658 (+) 2076 WP_024405652.1 penicillin-binding protein PBP2B -
  QNH80_RS00840 recR 170667..171263 (+) 597 WP_002935848.1 recombination mediator RecR -
  QNH80_RS00845 - 171368..172414 (+) 1047 WP_023369700.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29672.84 Da        Isoelectric Point: 6.1694

>NTDB_id=1155607 QNH80_RS00825 WP_023369694.1 166946..167749(+) (vicX) [Streptococcus suis isolate 861160_dhsdS]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGKRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1155607 QNH80_RS00825 WP_023369694.1 166946..167749(+) (vicX) [Streptococcus suis isolate 861160_dhsdS]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTAGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGATCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAAACGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAATAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822VJ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764

Multiple sequence alignment