Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH78_RS09680 Genome accession   NZ_OX352831
Coordinates   1975618..1976985 (-) Length   455 a.a.
NCBI ID   WP_074390174.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_dxerD_hsdSE     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970618..1981985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH78_RS09655 - 1971374..1972654 (-) 1281 WP_074390177.1 MFS transporter -
  QNH78_RS09660 - 1972746..1973405 (-) 660 WP_074390176.1 hypothetical protein -
  QNH78_RS09665 - 1973410..1973856 (-) 447 WP_074390175.1 LytTR family DNA-binding domain-containing protein -
  QNH78_RS09670 - 1974034..1974792 (-) 759 WP_002939965.1 TIGR00266 family protein -
  QNH78_RS09675 - 1975000..1975494 (-) 495 WP_024403073.1 carbonic anhydrase -
  QNH78_RS09680 radA 1975618..1976985 (-) 1368 WP_074390174.1 DNA repair protein RadA Machinery gene
  QNH78_RS09685 - 1976992..1977523 (-) 532 Protein_1869 histidine phosphatase family protein -
  QNH78_RS09690 - 1977528..1977971 (-) 444 WP_074390173.1 dUTP diphosphatase -
  QNH78_RS09695 - 1978073..1979857 (-) 1785 WP_024417148.1 ABC transporter ATP-binding protein -
  QNH78_RS09700 - 1979858..1981564 (-) 1707 WP_024417147.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49903.44 Da        Isoelectric Point: 6.1911

>NTDB_id=1155436 QNH78_RS09680 WP_074390174.1 1975618..1976985(-) (radA) [Streptococcus suis isolate 861160_dxerD_hsdSE]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARIKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKMPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1155436 QNH78_RS09680 WP_074390174.1 1975618..1976985(-) (radA) [Streptococcus suis isolate 861160_dxerD_hsdSE]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCTTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCTATTCAAGTGGCTCGCATTAAGACTAACATGGAGGAGTTCAAC
CGCGTCCTCGGTGGCGGTGTGGTACCGGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGGAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGATTCAATCCAGACCATCATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTAGCTGGACCGCGGACCTTGGAGCATATGGTGGATACTGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTTCGTATCTTGCGGGCGGTCAAAAACCGTTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGACGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGATGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment