Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   QNH78_RS08715 Genome accession   NZ_OX352831
Coordinates   1773946..1775736 (-) Length   596 a.a.
NCBI ID   WP_074390015.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_dxerD_hsdSE     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768946..1780736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH78_RS08695 - 1769744..1770646 (-) 903 WP_002938141.1 ABC transporter permease -
  QNH78_RS08700 opp4B 1770660..1771616 (-) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  QNH78_RS08705 - 1771618..1772559 (-) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  QNH78_RS08710 - 1772562..1773560 (-) 999 WP_009910778.1 ABC transporter ATP-binding protein -
  QNH78_RS08715 oppA 1773946..1775736 (-) 1791 WP_074390015.1 oligopeptide ABC transporter substrate-binding protein Regulator
  QNH78_RS08720 pbp3 1775949..1777190 (+) 1242 WP_074400581.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  QNH78_RS08725 sufB 1777443..1778858 (-) 1416 WP_074390013.1 Fe-S cluster assembly protein SufB -
  QNH78_RS08730 sufU 1779208..1779648 (-) 441 WP_012775691.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65697.74 Da        Isoelectric Point: 4.6364

>NTDB_id=1155432 QNH78_RS08715 WP_074390015.1 1773946..1775736(-) (oppA) [Streptococcus suis isolate 861160_dxerD_hsdSE]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFLAEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGERKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLESSYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESEKITA
VNKRVKSYDTKYGSASGTGLAYEGIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=1155432 QNH78_RS08715 WP_074390015.1 1773946..1775736(-) (oppA) [Streptococcus suis isolate 861160_dxerD_hsdSE]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCTGGCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCTTGGGTATCTCCTACAACTTCATCAGGTCTTTTAATTGATGAGTTGACTGAGAATACTACTGATTCAACA
TTTGGTGGTATGGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTAAAAGGCAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCGATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAT
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGGCCGTGGAAG
ATTAAGGAAATCGTCAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATCGCAGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATTTTGGTAAATATGACGAAGCAGCTGGTAAGAACGTTATGGATGAAAATGCCAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTAAGTCATTATACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGTGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGGCCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACGTTTGAGTCAGAAAAAATTACTGCT
GTTAATAAACGTGTGAAAAGCTATGATACAAAATACGGCTCAGCTTCGGGTACAGGTCTTGCTTATGAGGGTATCGAATT
GACAGCTGATAAGGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

99.664

100

0.997

Multiple sequence alignment