Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QNH78_RS08650 Genome accession   NZ_OX352831
Coordinates   1762117..1762851 (-) Length   244 a.a.
NCBI ID   WP_002939204.1    Uniprot ID   A0A0K2E869
Organism   Streptococcus suis isolate 861160_dxerD_hsdSE     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757117..1767851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH78_RS08620 - 1757345..1757641 (-) 297 WP_002942375.1 YlxR family protein -
  QNH78_RS08625 nusA 1757658..1758800 (-) 1143 WP_013730553.1 transcription termination factor NusA -
  QNH78_RS08630 rimP 1758873..1759343 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  QNH78_RS08635 trmB 1759601..1760239 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QNH78_RS08640 - 1760236..1761030 (-) 795 WP_013730554.1 phosphotransferase family protein -
  QNH78_RS08645 - 1761080..1762120 (-) 1041 WP_013730555.1 ABC transporter permease -
  QNH78_RS08650 pptA 1762117..1762851 (-) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  QNH78_RS08655 - 1762914..1763327 (+) 414 WP_002939203.1 HIT family protein -
  QNH78_RS08660 - 1763329..1763631 (+) 303 WP_002939199.1 hypothetical protein -
  QNH78_RS08665 - 1763740..1764933 (-) 1194 WP_044666811.1 LCP family protein -
  QNH78_RS08670 - 1764930..1765457 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  QNH78_RS08675 tsaE 1765450..1765890 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  QNH78_RS08680 - 1765991..1767655 (-) 1665 WP_074400592.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26760.04 Da        Isoelectric Point: 4.3999

>NTDB_id=1155431 QNH78_RS08650 WP_002939204.1 1762117..1762851(-) (pptA) [Streptococcus suis isolate 861160_dxerD_hsdSE]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1155431 QNH78_RS08650 WP_002939204.1 1762117..1762851(-) (pptA) [Streptococcus suis isolate 861160_dxerD_hsdSE]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E869

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment