Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ONG87_RS17885 Genome accession   NZ_OX352319
Coordinates   3932141..3933508 (-) Length   455 a.a.
NCBI ID   WP_122475371.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3927141..3938508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS17865 (AHFPHNDE_03554) - 3929027..3929488 (+) 462 WP_192137694.1 isoprenylcysteine carboxylmethyltransferase family protein -
  ONG87_RS17870 (AHFPHNDE_03555) - 3929529..3929897 (+) 369 WP_192058522.1 PilZ domain-containing protein -
  ONG87_RS17875 (AHFPHNDE_03556) - 3929949..3930641 (-) 693 WP_185795199.1 HAD-IA family hydrolase -
  ONG87_RS17880 (AHFPHNDE_03557) - 3930754..3931989 (-) 1236 WP_264381767.1 M20/M25/M40 family metallo-hydrolase -
  ONG87_RS17885 (AHFPHNDE_03558) radA 3932141..3933508 (-) 1368 WP_122475371.1 DNA repair protein RadA Machinery gene
  ONG87_RS17890 (AHFPHNDE_03559) mscL 3933720..3934172 (+) 453 WP_122475373.1 large-conductance mechanosensitive channel protein MscL -
  ONG87_RS17895 (AHFPHNDE_03560) - 3934400..3935176 (-) 777 WP_122475374.1 ferredoxin--NADP reductase -
  ONG87_RS17900 (AHFPHNDE_03561) - 3935555..3936679 (+) 1125 WP_192175832.1 class I SAM-dependent methyltransferase -
  ONG87_RS17905 (AHFPHNDE_03562) - 3936776..3936937 (-) 162 WP_082223659.1 DUF2474 domain-containing protein -
  ONG87_RS17910 (AHFPHNDE_03563) cydB 3936988..3937995 (-) 1008 WP_122475377.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48762.38 Da        Isoelectric Point: 6.8986

>NTDB_id=1155295 ONG87_RS17885 WP_122475371.1 3932141..3933508(-) (radA) [Pseudomonas sp. MM227]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVIESGAAAPPSGRTGWTGQQAQLKTLAEVSIEEIPRFSTASAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAMRMPALYVTGEESQQQVAMRARRLGLPQDKLKVMTETCIETIIA
TAKVEQPKVMVIDSIQTIFTENLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAIMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKANAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1155295 ONG87_RS17885 WP_122475371.1 3932141..3933508(-) (radA) [Pseudomonas sp. MM227]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGTGCCACGTTTCCCAAATGGGCAGGCCAATGCGGCGAGTG
CGGTGCCTGGAACACCCTGGTGGAGACCGTCATCGAAAGCGGCGCTGCCGCACCGCCCAGTGGCCGCACCGGCTGGACAG
GGCAGCAGGCCCAACTCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATCCCGCGCTTCTCGACTGCATCGGCCGAGCTG
GACCGCGTGCTCGGCGGCGGCCTGGTCGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCCACCAT
TCTGCTGCAGACCCTGTGCAACATCGCCATGCGCATGCCCGCGCTGTACGTCACCGGCGAAGAATCGCAGCAACAGGTGG
CCATGCGCGCGCGACGCCTGGGCCTGCCCCAGGACAAGCTCAAGGTCATGACCGAGACCTGCATCGAAACCATCATCGCC
ACCGCCAAGGTCGAGCAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAAAACCTGCAGTCCGCGCC
CGGCGGCGTGTCGCAGGTGCGCGAAAGCGCCGCGCTGCTGGTGCGTTATGCCAAACAGAGCGGCACGGCCATCTTTCTGG
TTGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGCCCCCGCGTGCTCGAGCACATGGTCGATACCGTGCTGTACTTCGAA
GGCGAATCCGATGGCCGCCTGCGCTTGTTGCGGGCCGTGAAGAACCGCTTCGGCGCGATCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCGGCGATCTTTCTCACTCGTGCCCAGGAAGAAGTCCCCGGCA
GTGTGGTCATGGCCACGTGGGAAGGTACCCGGCCCATGCTGGTGGAAGTGCAGGCGCTGGTCGACGACAGCCACCTGTCC
AACCCGCGCCGGGTCACTCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCAGTACTGCATCGGCATGGCGGCAT
CCCCACCCATGACCAAGACGTGTTCCTCAACGTGGTCGGCGGCGTGAAAGTGCTGGAAACCGCTTCCGACCTGGCGTTGC
TCGCGGCAATCATGTCCAGCCTGCGCAACCGTCCGCTGCCGCACGACTTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAGGTGCGCCCGGTTCCCAGTGGTCAGGAACGGCTCAAGGAAGCGGCCAAGCATGGCTTCAAGCGTGCCATCGTGCCCAA
GGCCAATGCGCCCAAGGAAGCGCCGCCAGGCTTGCAGGTCATTGCCGTGACGCGTCTGGAACAAGCGCTGGATGCCTTGT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(75-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

100

0.495
  radA Streptococcus pneumoniae Rx1

47.174

100

0.477
  radA Streptococcus pneumoniae R6

47.174

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.174

100

0.477
  radA Streptococcus pneumoniae D39

47.174

100

0.477
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus mitis NCTC 12261

47.149

100

0.473

Multiple sequence alignment