Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ONG87_RS01730 Genome accession   NZ_OX352319
Coordinates   380889..383108 (-) Length   739 a.a.
NCBI ID   WP_122480449.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375889..388108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS01710 (AHFPHNDE_00339) hslU 376120..377457 (-) 1338 WP_122480452.1 ATP-dependent protease ATPase subunit HslU -
  ONG87_RS01715 (AHFPHNDE_00340) hslV 377545..378075 (-) 531 WP_043191380.1 ATP-dependent protease subunit HslV -
  ONG87_RS01720 (AHFPHNDE_00341) - 378280..378969 (-) 690 WP_122480451.1 SPOR domain-containing protein -
  ONG87_RS01725 (AHFPHNDE_00342) argS 378971..380707 (-) 1737 WP_122480450.1 arginine--tRNA ligase -
  ONG87_RS01730 (AHFPHNDE_00343) priA 380889..383108 (-) 2220 WP_122480449.1 primosomal protein N' Machinery gene
  ONG87_RS01735 (AHFPHNDE_00344) rpmE 383412..383630 (+) 219 WP_043193699.1 50S ribosomal protein L31 -
  ONG87_RS01740 (AHFPHNDE_00345) - 383630..384436 (+) 807 WP_264382813.1 thermonuclease family protein -
  ONG87_RS01745 (AHFPHNDE_00346) - 384616..385884 (+) 1269 WP_122714552.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81537.99 Da        Isoelectric Point: 8.3851

>NTDB_id=1155274 ONG87_RS01730 WP_122480449.1 380889..383108(-) (priA) [Pseudomonas sp. MM227]
MPDVILRLALPSPLRRLFDYKAPANTAHTVFMPGMRLRVPFGRREMIGILIEVASHSDVPADKLKPAIALLDAVSPLPPA
LFKLCLWTSQYYQHGLGDTLSWALPVLLRQGEPAEARQERFWHAAADARLDDPRIARAPKQRDALKTLAQHPHGVAHQLL
SKLQLNKDSLDLLLAKQLVSVEVRRHGPGPRAEHWLAQPELPLNEEQRAAFEAIRASLGGFHAFLLAGVTGSGKTEVYLQ
LIHECLEAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRDRLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRASQENIPIVLGSATPSLESLHNAHTGRYGLLRIDHRAGGAQQPKFMRLDVKS
RPLDSGISGPMQQAIGQTLANGQQVLVFLNRRGFAPTLLCHDCGWLSECPRCDARTTVHQRSGELRCHHCGHVERVPRQC
PKCGTVDLRPVGAGTERAEERLAILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGHPCILVGTQMLAKGHHFPRVTLVSI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVIIQTHLADHPLLVQLTEQGYFAFAEQALAERRGAGLPPFAHL
ALLRAEAHKPGQAEAFLDEACAAAEVLVAQLALGGLELLGPVPAPMERRAGRYRAQLLVQATLRAPLHRLLNAWMLQLEQ
LPSGRQVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1155274 ONG87_RS01730 WP_122480449.1 380889..383108(-) (priA) [Pseudomonas sp. MM227]
GTGCCCGACGTCATCCTGCGCCTCGCCCTGCCCTCGCCGCTGCGACGCCTGTTCGACTACAAGGCGCCCGCCAACACTGC
GCACACCGTGTTCATGCCCGGCATGCGCCTGCGGGTGCCGTTCGGGCGGCGGGAAATGATCGGCATCCTGATCGAAGTGG
CCAGCCACAGCGACGTACCGGCCGACAAGCTCAAGCCCGCCATTGCCCTGCTCGATGCGGTAAGCCCCCTGCCACCTGCG
CTGTTCAAGTTGTGCCTGTGGACTTCGCAGTACTACCAGCACGGCCTGGGGGACACCCTCAGCTGGGCGTTGCCGGTGCT
GCTGCGTCAGGGCGAACCGGCCGAAGCGCGCCAGGAGCGCTTCTGGCACGCCGCCGCCGATGCACGACTGGACGATCCGC
GCATCGCTCGCGCGCCCAAGCAGCGCGATGCCCTCAAGACCCTGGCCCAGCACCCCCATGGCGTCGCCCATCAGCTGTTG
AGCAAGCTGCAACTGAACAAGGACAGCCTCGACCTGCTGCTGGCCAAGCAACTGGTCAGCGTGGAAGTGCGCCGCCACGG
CCCCGGGCCGCGGGCCGAACACTGGCTGGCGCAACCGGAACTGCCGCTCAACGAAGAGCAACGCGCGGCTTTCGAGGCGA
TTCGCGCCAGCCTCGGCGGCTTCCATGCGTTTCTCCTGGCGGGCGTGACCGGCAGCGGCAAGACCGAGGTGTACCTGCAA
CTGATCCACGAATGCCTGGAAGCCGGCAAACAGGCGTTGGTGCTGATCCCGGAAATCAACCTCGGCCCGCAAACCCTGGC
GCGCTTCGAGCAGCGCTTCAACGCACGCATCGCGCTGGTGCACTCGGCGGTCAATGACCGCGACCGCCTCGACGCCTGGC
TGGCGGCACGCGATGGCGAGGCCGACATCATCATTGGCACCCGCTCGGCGCTGTTCACGCCGATGAAGAACCCTGGGCTG
ATCATCATCGACGAAGAGCATGACGGCTCCTATAAACAGCAGGAAGGCCTGCGTTACCACGCACGCGACCTGGCGCTGGT
GCGCGCCAGCCAAGAGAACATTCCCATTGTGCTGGGCTCGGCCACGCCTTCCCTGGAGAGCCTGCACAACGCCCATACCG
GCCGCTACGGCCTGCTGCGCATCGACCATCGCGCCGGTGGCGCCCAGCAACCCAAGTTCATGCGCCTGGATGTAAAGAGC
CGGCCGCTGGACAGCGGCATCAGCGGACCGATGCAGCAGGCCATCGGCCAGACCCTGGCCAATGGCCAACAGGTGCTGGT
GTTTCTCAATCGCCGCGGCTTCGCGCCTACCCTGCTGTGCCACGACTGCGGCTGGTTATCCGAGTGCCCACGCTGCGATG
CCCGTACCACGGTCCACCAACGCTCGGGCGAGTTGCGCTGCCATCATTGCGGGCATGTCGAACGCGTGCCGCGCCAGTGC
CCCAAGTGCGGCACGGTGGACCTGCGTCCGGTCGGCGCCGGCACCGAGCGCGCCGAGGAACGCCTGGCGATCCTCTTTCC
CGATTACCCGGTGCTGCGCGTCGACCGCGACAGCACCTCGCGCAAGGACGCGATGAACCAGCTGTTCGCAACCATCCAGA
AAGGCCATCCGTGCATCCTGGTCGGCACCCAGATGCTTGCCAAGGGGCATCACTTTCCACGGGTCACCCTGGTGTCGATT
CTGGATGCCGACGGCGGGCTGTTCTCCGGCGACTTCCGCGCCAGCGAGCGCATGGCACAGTTGATCGTCCAGGTGGCAGG
CCGCGCCGGGCGCGCGGAGGAACCGGGCAAGGTGATCATTCAGACCCACCTGGCCGACCACCCGCTGCTGGTGCAACTGA
CCGAGCAGGGCTACTTCGCTTTCGCCGAGCAGGCCCTGGCCGAGCGACGGGGCGCAGGCCTGCCGCCCTTCGCGCACCTG
GCGCTACTGCGTGCCGAAGCGCACAAGCCGGGCCAGGCCGAAGCCTTTCTGGATGAGGCCTGTGCGGCAGCCGAAGTGCT
GGTGGCGCAACTGGCCCTGGGCGGCCTGGAGCTGCTGGGGCCGGTCCCGGCACCCATGGAACGGCGCGCCGGACGCTATC
GCGCACAGTTGCTGGTCCAGGCAACGCTGCGCGCCCCGCTGCACCGCCTGCTCAATGCCTGGATGCTGCAACTGGAGCAA
CTGCCGAGCGGGCGACAGGTGCGTTGGTCGCTGGATGTGGACCCGGTGGATTTGTATTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(212-367)

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

47.919

100

0.483

Multiple sequence alignment