Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QML77_RS11545 Genome accession   NZ_OX346407
Coordinates   2285111..2286928 (-) Length   605 a.a.
NCBI ID   WP_016250662.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1274     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2280111..2291928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML77_RS11520 (CIRMBP1274_02301) - 2280114..2281067 (-) 954 WP_047242628.1 metal ABC transporter substrate-binding protein -
  QML77_RS11525 (CIRMBP1274_02302) - 2281703..2282545 (+) 843 WP_281957371.1 Rgg/GadR/MutR family transcriptional regulator -
  QML77_RS11530 (CIRMBP1274_02303) - 2282697..2283584 (+) 888 WP_047242626.1 ABC transporter ATP-binding protein -
  QML77_RS11535 (CIRMBP1274_02304) - 2283581..2284315 (+) 735 WP_016250664.1 ABC transporter permease -
  QML77_RS11540 (CIRMBP1274_02305) - 2284308..2284868 (+) 561 WP_047242625.1 hypothetical protein -
  QML77_RS11545 (CIRMBP1274_02306) pepF 2285111..2286928 (-) 1818 WP_016250662.1 oligoendopeptidase F Regulator
  QML77_RS11550 (CIRMBP1274_02307) - 2286970..2287968 (-) 999 WP_281957372.1 competence protein CoiA family protein -
  QML77_RS11555 (CIRMBP1274_02308) ispE 2288046..2288897 (-) 852 WP_016250660.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  QML77_RS11560 (CIRMBP1274_02309) - 2288960..2289130 (-) 171 WP_281957373.1 hypothetical protein -
  QML77_RS11565 (CIRMBP1274_02310) - 2289171..2290742 (-) 1572 WP_281957374.1 ABC transporter ATP-binding protein -
  QML77_RS11570 (CIRMBP1274_02311) - 2290832..2291704 (-) 873 WP_060470648.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69321.76 Da        Isoelectric Point: 4.7048

>NTDB_id=1155185 QML77_RS11545 WP_016250662.1 2285111..2286928(-) (pepF) [Enterococcus cecorum isolate CIRMBP-1274]
MSETKQLPLRSEVPEELTWDLSVIFKDDAAFEEAFAALNDRLAEVGNYQGTLANGAKAFLAALEYCLDVMRQLETLYVYS
HLRNDQDTTNATDQALHSRANALVAKASEAIAWFEPEVLSLEDAKIWGYFDELPELSLYRHYIQQIVDNREHILPAEQEA
LLAGAGEIFGAAADTFSVLNNADLEFPVIEDEKGEKVQLSHGVYGQLLESTDRRVRKDAFEGLYKVYQQFARTFASTLST
NVKRHNYAAKVRHFESARQAALSGNHIPESVYETLVSVVNENLPLLHRYMALRKRLLNLDEMHMYDVYTPLLGESSLKYT
YEEATKEAFKALEPMGEEYLAVVKEAFENRWIDVVENKGKRSGAYSSGCYDTNPYILLNWHDTLDQLFTLVHEMGHSVHS
YFTRKNQPYVYGDYSIFLAEIASTTNENILTEYLLETQKDPKVRAFVLNHYLDGFKATVFRQTQFAEFEHFIHVEDAKGT
PLTAEFLNDYYGNLNKRYYGDAVTSDPQISYEWSRIPHFYYNYYVYQYATGFSAASALAKKILSKEENALENYLNYLKAG
NSDYPIEVMKKAGVDMTKADYLKEAMQVFAQRLDELEALVSELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1155185 QML77_RS11545 WP_016250662.1 2285111..2286928(-) (pepF) [Enterococcus cecorum isolate CIRMBP-1274]
ATGTCAGAAACAAAACAATTACCATTACGTTCTGAAGTACCAGAAGAATTAACTTGGGACTTATCTGTCATTTTTAAAGA
CGATGCAGCCTTTGAAGAAGCATTTGCCGCATTGAATGATCGTTTGGCAGAAGTAGGCAACTATCAAGGAACACTAGCCA
ATGGTGCCAAAGCCTTTTTAGCTGCTTTAGAATATTGCTTAGATGTGATGCGTCAATTAGAAACGCTTTATGTTTATTCT
CATTTACGCAATGACCAAGACACTACCAATGCGACAGATCAAGCCTTGCATTCACGTGCCAATGCCTTAGTTGCTAAAGC
TAGTGAAGCCATTGCCTGGTTTGAACCGGAAGTATTGTCTTTAGAGGATGCAAAAATTTGGGGTTATTTCGATGAATTAC
CAGAATTAAGTCTTTATCGCCATTATATCCAACAAATCGTGGACAATCGCGAACACATTTTACCAGCTGAGCAAGAAGCA
TTATTAGCTGGTGCCGGTGAAATTTTTGGCGCTGCAGCAGATACTTTCTCTGTTTTAAACAATGCTGACCTAGAATTTCC
GGTGATTGAAGATGAAAAAGGCGAAAAAGTCCAATTATCTCATGGCGTATATGGTCAATTATTAGAAAGCACTGATCGTC
GTGTACGTAAAGATGCCTTTGAAGGTTTATATAAAGTGTACCAACAATTTGCGCGTACCTTTGCATCCACTTTAAGTACC
AATGTGAAACGCCATAACTATGCTGCAAAAGTACGTCATTTTGAATCTGCCCGTCAAGCAGCATTAAGTGGCAATCATAT
TCCTGAAAGTGTGTACGAAACTTTAGTCAGCGTGGTTAATGAAAACTTACCATTGTTACACCGCTACATGGCTTTACGCA
AACGTTTATTAAACTTAGATGAAATGCACATGTACGATGTCTACACACCACTTTTAGGTGAAAGTTCATTGAAATATACT
TATGAAGAAGCCACCAAAGAAGCCTTCAAAGCATTAGAACCAATGGGCGAGGAATACTTAGCTGTGGTGAAAGAAGCTTT
TGAAAACCGCTGGATTGATGTGGTGGAAAATAAAGGTAAACGCAGTGGGGCTTATTCATCAGGTTGCTATGATACCAATC
CATACATCTTGTTAAACTGGCATGACACCCTAGACCAATTATTTACTTTGGTTCATGAAATGGGCCACTCTGTTCATAGT
TACTTCACACGCAAAAATCAACCATATGTATACGGTGATTACTCGATTTTCTTAGCTGAAATTGCGTCTACAACGAATGA
AAATATCTTAACTGAATATTTATTAGAAACCCAAAAAGATCCTAAAGTGCGTGCCTTTGTCTTAAATCATTATCTAGATG
GCTTTAAGGCAACTGTTTTCCGTCAAACCCAATTTGCAGAATTTGAACACTTTATTCATGTGGAAGATGCAAAAGGTACC
CCATTAACTGCTGAATTCTTAAATGATTATTATGGCAACTTGAACAAACGCTACTATGGCGATGCAGTAACAAGTGATCC
ACAAATCAGCTATGAATGGTCACGTATCCCTCACTTCTACTACAATTATTATGTTTATCAATATGCAACTGGCTTTAGTG
CTGCCTCTGCCTTAGCGAAGAAGATTCTAAGCAAGGAAGAAAATGCCTTAGAAAACTACTTGAACTATCTAAAAGCTGGT
AATAGTGACTACCCAATCGAAGTCATGAAAAAAGCCGGCGTAGATATGACTAAAGCAGATTATCTAAAAGAAGCCATGCA
AGTCTTCGCACAACGCCTAGACGAACTAGAAGCACTAGTAAGTGAGCTAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.853

97.686

0.555

Multiple sequence alignment