Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QML63_RS00220 Genome accession   NZ_OX346406
Coordinates   52298..53668 (+) Length   456 a.a.
NCBI ID   WP_282013345.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 47298..58668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML63_RS00200 (CIRMBP1212_00040) - 48649..49896 (-) 1248 WP_243192488.1 glutamate-5-semialdehyde dehydrogenase -
  QML63_RS00205 (CIRMBP1212_00041) proB 49912..50715 (-) 804 WP_235426847.1 glutamate 5-kinase -
  QML63_RS11160 - 50849..51013 (-) 165 WP_162607281.1 hypothetical protein -
  QML63_RS11165 (CIRMBP1212_00043) - 51251..51541 (-) 291 WP_345741226.1 hypothetical protein -
  QML63_RS00215 (CIRMBP1212_00044) - 51764..52285 (+) 522 WP_026209954.1 hypothetical protein -
  QML63_RS00220 (CIRMBP1212_00045) radA 52298..53668 (+) 1371 WP_282013345.1 DNA repair protein RadA Machinery gene
  QML63_RS00225 (CIRMBP1212_00046) - 53868..54974 (+) 1107 WP_016250426.1 PIN/TRAM domain-containing protein -
  QML63_RS00230 (CIRMBP1212_00047) rfbC 55014..55571 (+) 558 WP_282013346.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  QML63_RS00235 (CIRMBP1212_00048) - 55865..56134 (+) 270 WP_243184525.1 hypothetical protein -
  QML63_RS00240 (CIRMBP1212_00049) - 56203..56679 (+) 477 WP_282013347.1 GNAT family N-acetyltransferase -
  QML63_RS00245 (CIRMBP1212_00050) gltX 56774..58231 (+) 1458 WP_243192492.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49983.80 Da        Isoelectric Point: 7.7241

>NTDB_id=1155105 QML63_RS00220 WP_282013345.1 52298..53668(+) (radA) [Enterococcus cecorum isolate CIRMBP-1212]
MAKKAKTQFECQHCGYISPRYLGKCPNCNSWNSMMEVKIENTTDVRQAVSFTGIKSQPTKITEVVPKKTPRVQTEIGELN
RVLGGGVVPGSLILLGGDPGIGKSTLLLQVSEQLTKAHGKVLYVSGEESAEQIKMRAERLGVLHESFYVYAENDMEAIRQ
AIEQLSPDYVIIDSIQTMIQPSISSVAGSVSQVRETTAELMRIAKSNQIAIFIVGHVTKEGALAGPRMLEHMVDTVLYFE
GERQQSFRILRAVKNRFGSTNEIGIFEMHEDGLHEVINPSQVFLEERLQGATGSAIVVTMEGTRPLLVEIQALITPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGMLLQNQDAYLKAAGGVKLNEPAIDLSIAVSIASSYKEKGTQATDCFIGEIGLTG
EIRRVNAIEQRIKEVQKLGFKRVFVPKNNLANLEIPAGIEVIGVSTLAETMKKVFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1155105 QML63_RS00220 WP_282013345.1 52298..53668(+) (radA) [Enterococcus cecorum isolate CIRMBP-1212]
GTGGCAAAAAAAGCAAAAACACAATTTGAGTGTCAACATTGTGGCTATATTTCCCCACGTTATTTAGGGAAATGTCCGAA
TTGTAATAGTTGGAACTCGATGATGGAAGTCAAAATCGAAAATACCACCGATGTCCGTCAAGCTGTTTCGTTTACCGGAA
TCAAGAGCCAACCAACCAAAATTACCGAAGTGGTGCCGAAAAAAACACCGCGCGTCCAAACAGAAATTGGTGAGTTGAAT
CGCGTGCTAGGTGGCGGCGTGGTTCCTGGTTCCTTGATTTTACTAGGAGGCGATCCGGGTATTGGCAAGTCGACACTGTT
ATTACAAGTATCCGAGCAGCTAACCAAAGCCCACGGGAAAGTCTTGTACGTCTCAGGGGAAGAAAGTGCTGAGCAAATCA
AGATGCGTGCGGAACGTCTAGGGGTCTTGCATGAGTCCTTTTATGTCTATGCGGAAAATGATATGGAGGCCATTCGTCAA
GCCATCGAACAACTTTCGCCTGATTATGTGATTATTGATTCGATTCAAACTATGATTCAGCCAAGCATTTCTTCAGTGGC
GGGAAGTGTCAGTCAGGTCCGCGAAACCACCGCTGAATTGATGCGCATTGCTAAGAGTAATCAGATTGCCATTTTTATCG
TTGGTCATGTGACAAAAGAAGGGGCACTAGCAGGTCCTAGAATGTTAGAACACATGGTTGATACCGTGTTATATTTTGAA
GGAGAACGCCAACAGTCCTTTAGAATTTTGCGTGCGGTGAAAAATCGTTTCGGTTCGACCAATGAAATCGGCATTTTCGA
GATGCATGAAGACGGCTTGCATGAAGTCATCAATCCTTCGCAAGTCTTTTTAGAAGAACGTCTGCAAGGAGCGACTGGTT
CGGCAATCGTGGTGACGATGGAAGGAACGCGCCCATTATTAGTGGAGATTCAAGCTTTGATTACACCCACCATGTTTGGA
AATGCCAAGCGTACCACGACAGGTCTAGACTTTAATCGGGTATCTTTAATTATGGCGGTCTTGGAAAAGCGTGCCGGAAT
GTTATTGCAAAATCAAGATGCCTATTTAAAAGCAGCCGGTGGTGTGAAGTTAAACGAGCCAGCAATCGATTTATCCATTG
CGGTGAGCATTGCCTCTAGTTACAAGGAAAAAGGCACCCAGGCAACGGATTGTTTTATCGGTGAAATTGGCTTAACTGGG
GAAATCAGACGCGTCAATGCCATCGAACAACGCATCAAAGAAGTGCAAAAGTTAGGCTTTAAACGGGTATTTGTACCTAA
AAATAATTTAGCTAATTTAGAAATTCCAGCGGGTATTGAAGTTATCGGGGTTTCTACTTTGGCTGAAACGATGAAAAAAG
TCTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(67-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

70.549

99.781

0.704
  radA Streptococcus pneumoniae D39

70.549

99.781

0.704
  radA Streptococcus pneumoniae R6

70.549

99.781

0.704
  radA Streptococcus pneumoniae TIGR4

70.549

99.781

0.704
  radA Streptococcus mitis NCTC 12261

70.549

99.781

0.704
  radA Streptococcus mitis SK321

70.549

99.781

0.704
  radA Bacillus subtilis subsp. subtilis str. 168

62.637

99.781

0.625

Multiple sequence alignment