Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QML80_RS13250 Genome accession   NZ_OX346405
Coordinates   2633191..2635008 (-) Length   605 a.a.
NCBI ID   WP_016250662.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1228     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2628191..2640008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML80_RS13220 (CIRMBP1228_02677) - 2629254..2629472 (+) 219 WP_016250668.1 hypothetical protein -
  QML80_RS13225 (CIRMBP1228_02678) - 2629782..2630093 (+) 312 WP_047340865.1 helix-turn-helix transcriptional regulator -
  QML80_RS13230 (CIRMBP1228_02679) - 2630065..2630625 (+) 561 WP_016250666.1 hypothetical protein -
  QML80_RS13235 (CIRMBP1228_02680) - 2630777..2631664 (+) 888 WP_047242626.1 ABC transporter ATP-binding protein -
  QML80_RS13240 (CIRMBP1228_02681) - 2631661..2632395 (+) 735 WP_016250664.1 ABC transporter permease -
  QML80_RS13245 (CIRMBP1228_02682) - 2632388..2632948 (+) 561 WP_016250663.1 hypothetical protein -
  QML80_RS13250 (CIRMBP1228_02683) pepF 2633191..2635008 (-) 1818 WP_016250662.1 oligoendopeptidase F Regulator
  QML80_RS13255 (CIRMBP1228_02684) - 2635050..2636048 (-) 999 WP_047340866.1 competence protein CoiA family protein -
  QML80_RS13260 (CIRMBP1228_02685) ispE 2636124..2636975 (-) 852 WP_016250660.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  QML80_RS13265 (CIRMBP1228_02686) - 2637038..2637205 (-) 168 WP_016250659.1 hypothetical protein -
  QML80_RS13270 (CIRMBP1228_02687) - 2637249..2638820 (-) 1572 WP_047340867.1 ABC transporter ATP-binding protein -
  QML80_RS13275 (CIRMBP1228_02688) - 2638910..2639782 (-) 873 WP_047340868.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69321.76 Da        Isoelectric Point: 4.7048

>NTDB_id=1155102 QML80_RS13250 WP_016250662.1 2633191..2635008(-) (pepF) [Enterococcus cecorum isolate CIRMBP-1228]
MSETKQLPLRSEVPEELTWDLSVIFKDDAAFEEAFAALNDRLAEVGNYQGTLANGAKAFLAALEYCLDVMRQLETLYVYS
HLRNDQDTTNATDQALHSRANALVAKASEAIAWFEPEVLSLEDAKIWGYFDELPELSLYRHYIQQIVDNREHILPAEQEA
LLAGAGEIFGAAADTFSVLNNADLEFPVIEDEKGEKVQLSHGVYGQLLESTDRRVRKDAFEGLYKVYQQFARTFASTLST
NVKRHNYAAKVRHFESARQAALSGNHIPESVYETLVSVVNENLPLLHRYMALRKRLLNLDEMHMYDVYTPLLGESSLKYT
YEEATKEAFKALEPMGEEYLAVVKEAFENRWIDVVENKGKRSGAYSSGCYDTNPYILLNWHDTLDQLFTLVHEMGHSVHS
YFTRKNQPYVYGDYSIFLAEIASTTNENILTEYLLETQKDPKVRAFVLNHYLDGFKATVFRQTQFAEFEHFIHVEDAKGT
PLTAEFLNDYYGNLNKRYYGDAVTSDPQISYEWSRIPHFYYNYYVYQYATGFSAASALAKKILSKEENALENYLNYLKAG
NSDYPIEVMKKAGVDMTKADYLKEAMQVFAQRLDELEALVSELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1155102 QML80_RS13250 WP_016250662.1 2633191..2635008(-) (pepF) [Enterococcus cecorum isolate CIRMBP-1228]
ATGTCAGAAACAAAACAATTACCATTACGTTCTGAAGTACCAGAAGAATTAACTTGGGACTTATCTGTCATTTTTAAAGA
CGATGCAGCCTTTGAAGAAGCATTTGCCGCATTGAATGATCGTTTGGCAGAAGTAGGCAACTATCAAGGAACACTAGCCA
ATGGTGCCAAAGCCTTTTTAGCTGCTTTAGAATATTGCTTAGATGTGATGCGTCAATTAGAAACGCTTTATGTTTATTCT
CATTTACGCAATGACCAAGACACTACCAATGCGACAGATCAAGCCTTGCATTCACGTGCCAATGCCTTAGTTGCTAAAGC
TAGTGAAGCCATTGCCTGGTTTGAACCGGAAGTATTGTCTTTAGAGGATGCAAAAATTTGGGGTTATTTCGATGAATTAC
CAGAATTAAGTCTTTATCGCCATTATATCCAACAAATCGTGGACAATCGCGAACACATTTTACCAGCTGAGCAAGAAGCA
TTATTAGCTGGTGCCGGTGAAATTTTTGGCGCTGCAGCAGATACTTTCTCTGTTTTAAACAATGCTGACCTAGAATTTCC
GGTGATTGAAGATGAAAAAGGCGAAAAAGTCCAATTATCTCATGGCGTATATGGTCAATTATTAGAAAGCACTGATCGTC
GTGTACGTAAAGATGCCTTTGAAGGTTTATATAAAGTGTACCAACAATTTGCGCGTACCTTTGCATCCACTTTAAGTACC
AATGTGAAACGCCATAACTATGCTGCAAAAGTACGTCATTTTGAATCTGCCCGTCAAGCAGCATTAAGTGGCAATCATAT
TCCTGAAAGTGTGTACGAAACTTTAGTCAGCGTGGTTAATGAAAACTTACCATTGTTACACCGCTACATGGCTTTGCGCA
AACGTTTATTAAACTTAGATGAAATGCACATGTACGATGTCTACACACCACTTTTAGGTGAAAGTTCATTGAAATATACT
TATGAAGAAGCCACCAAAGAAGCCTTCAAAGCATTAGAACCAATGGGCGAGGAATACTTAGCTGTGGTGAAAGAAGCTTT
TGAAAACCGCTGGATTGATGTGGTGGAAAATAAAGGTAAACGCAGTGGGGCTTATTCATCAGGTTGCTATGATACCAATC
CATACATCTTGTTAAACTGGCATGACACCCTAGACCAATTATTTACTTTGGTTCATGAAATGGGCCACTCTGTTCATAGT
TACTTCACACGCAAAAATCAACCATATGTATACGGTGATTACTCGATTTTCTTAGCTGAAATTGCGTCTACAACGAATGA
AAATATCTTAACTGAATATTTATTAGAAACACAAAAAGATCCTAAAGTGCGTGCCTTTGTCTTAAATCATTATCTAGATG
GCTTTAAGGCAACTGTTTTCCGTCAAACCCAATTTGCAGAATTTGAACACTTTATTCATGTGGAAGATGCAAAAGGTACC
CCATTAACTGCTGAATTCTTAAATGATTATTATGGCAACTTGAACAAACGCTACTATGGCGATGCAGTAACAAGTGATCC
ACAAATCAGCTATGAATGGTCACGTATCCCTCACTTCTACTACAATTATTATGTTTATCAATATGCAACTGGCTTTAGTG
CTGCCTCTGCCTTAGCGAAGAAGATTCTAAGCAAGGAAGAAAATGCCTTAGAAAACTACTTGAACTATCTAAAAGCTGGT
AATAGTGACTACCCAATCGAAGTCATGAAAAAAGCCGGCGTAGATATGACTAAAGCAGATTATCTAAAAGAAGCCATGCA
AGTCTTCGCACAACGCCTAGACGAACTAGAAGCACTAGTAAGTGAGCTAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.853

97.686

0.555

Multiple sequence alignment