Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QML50_RS10480 Genome accession   NZ_OX346403
Coordinates   2101100..2102917 (-) Length   605 a.a.
NCBI ID   WP_281956869.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1283     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2096100..2107917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML50_RS10455 (CIRMBP1283_02098) - 2096102..2097055 (-) 954 WP_047242628.1 metal ABC transporter substrate-binding protein -
  QML50_RS10460 (CIRMBP1283_02099) - 2097691..2098533 (+) 843 WP_047242627.1 Rgg/GadR/MutR family transcriptional regulator -
  QML50_RS10465 (CIRMBP1283_02100) - 2098685..2099572 (+) 888 WP_047242626.1 ABC transporter ATP-binding protein -
  QML50_RS10470 (CIRMBP1283_02101) - 2099569..2100303 (+) 735 WP_016250664.1 ABC transporter permease -
  QML50_RS10475 (CIRMBP1283_02102) - 2100296..2100856 (+) 561 WP_047242625.1 hypothetical protein -
  QML50_RS10480 (CIRMBP1283_02103) pepF 2101100..2102917 (-) 1818 WP_281956869.1 oligoendopeptidase F Regulator
  QML50_RS10485 (CIRMBP1283_02104) - 2102959..2103957 (-) 999 WP_047242623.1 competence protein CoiA family protein -
  QML50_RS10490 (CIRMBP1283_02105) ispE 2104035..2104886 (-) 852 WP_047242622.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  QML50_RS10495 (CIRMBP1283_02106) - 2105172..2106758 (-) 1587 WP_326929979.1 ABC transporter ATP-binding protein -
  QML50_RS10500 (CIRMBP1283_02107) - 2106832..2107704 (-) 873 WP_047242621.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69275.78 Da        Isoelectric Point: 4.7310

>NTDB_id=1155016 QML50_RS10480 WP_281956869.1 2101100..2102917(-) (pepF) [Enterococcus cecorum isolate CIRMBP-1283]
MSETKQLPLRSEVPEELTWDLSVIFKDDAAFEEAFAALNDRLAEVGNYQGTLANGAKAFLAALEYCLDVMRQLETLYVYS
HLRNDQDTTNATDQALHSRANALVAKASEAIAWFEPEVLALEDAKIWGYFDELPELSLYRHYIQQIVDNREHILPAEQEA
LLAGAGEIFGAAADTFSVLNNADLEFPVIEDEKGEKVQLSHGVYGQLLESTDRRVRKDAFEGLYKVYQQFARTFASTLST
NVKRHNYAAKVRHFESARQAALSGNHIPESVYETLVSVVNENLPLLHRYMALRKRLLNLDEMHMYDVYTPLLGESSLKYT
YEEATKEAFKALEPMGEEYLAVVKEAFVNRWIDVVENKGKRSGAYSSGCYDTNPYILLNWHDTLDQLFTLVHEMGHSVHS
YFTRKNQPYVYGDYSIFLAEIASTTNENILTEYLLETQKDPKVRAFVLNHYLDGFKATVFRQTQFAEFEHFIHVEDAKGT
PLTAEFLNDYYGNLNKRYYGDAVTSDPQISYEWSRIPHFYYNYYVYQYATGFSAASALAKKILSKEENALENYLNYLKAG
NSDYPIEVMKKAGVDMTKADYLKEAMQVFAQRLDELEALVSELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1155016 QML50_RS10480 WP_281956869.1 2101100..2102917(-) (pepF) [Enterococcus cecorum isolate CIRMBP-1283]
ATGTCAGAAACAAAACAATTACCATTACGTTCTGAAGTACCAGAAGAATTAACTTGGGACTTATCTGTCATTTTTAAAGA
CGATGCAGCCTTTGAAGAAGCATTTGCCGCATTGAATGATCGTTTGGCAGAAGTAGGCAACTATCAAGGAACACTAGCTA
ATGGTGCCAAAGCCTTTTTAGCAGCTTTAGAATATTGCTTAGATGTGATGCGCCAATTAGAAACGCTTTATGTTTACTCT
CATTTACGCAATGACCAAGACACTACTAATGCGACAGATCAAGCCTTGCATTCACGTGCCAATGCCTTAGTTGCTAAAGC
TAGTGAAGCCATTGCCTGGTTTGAACCTGAAGTATTAGCATTAGAGGATGCAAAAATTTGGGGTTATTTCGATGAATTAC
CAGAATTAAGTCTTTATCGCCATTATATCCAACAAATCGTGGACAATCGCGAACACATTTTACCAGCTGAACAAGAAGCA
TTATTAGCTGGTGCTGGTGAAATTTTTGGTGCTGCAGCAGATACTTTCTCTGTTTTAAACAATGCCGACTTAGAATTTCC
GGTGATTGAAGATGAAAAAGGTGAAAAAGTCCAATTATCTCATGGCGTATATGGTCAATTATTAGAAAGCACTGATCGTC
GTGTACGTAAAGATGCCTTTGAAGGTTTATATAAAGTGTACCAACAATTTGCGCGTACCTTTGCATCCACTTTAAGTACC
AATGTGAAACGCCATAACTATGCTGCAAAAGTACGTCATTTTGAATCTGCCCGTCAAGCAGCATTAAGTGGCAATCATAT
TCCTGAAAGTGTGTACGAAACTTTAGTCAGCGTGGTTAATGAAAACTTACCATTGTTACACCGCTACATGGCTTTGCGCA
AACGTTTATTAAACTTAGATGAAATGCACATGTACGATGTCTACACACCACTTTTAGGTGAAAGTTCATTGAAATATACT
TATGAAGAAGCCACCAAAGAAGCCTTCAAAGCATTAGAACCAATGGGCGAGGAATACTTAGCTGTGGTGAAAGAAGCTTT
TGTGAACCGCTGGATTGATGTGGTGGAAAATAAAGGTAAACGAAGTGGGGCTTATTCATCAGGTTGCTATGATACCAATC
CATACATCTTGTTAAACTGGCATGACACCCTAGACCAATTATTTACTTTGGTTCATGAAATGGGCCACTCTGTTCATAGT
TACTTCACACGCAAAAATCAACCATATGTATACGGTGATTACTCGATTTTCTTAGCTGAAATTGCGTCTACAACGAATGA
AAATATCTTAACTGAATATTTATTAGAAACACAAAAAGATCCTAAAGTGCGTGCCTTTGTCTTAAATCATTATCTAGATG
GCTTTAAGGCAACTGTTTTCCGTCAAACCCAATTTGCAGAATTTGAACACTTTATTCATGTGGAAGATGCAAAAGGTACC
CCATTAACTGCTGAATTCTTAAATGATTATTATGGCAACTTGAACAAACGCTACTATGGCGATGCAGTAACAAGTGATCC
ACAAATCAGCTATGAATGGTCACGTATCCCTCACTTCTACTACAATTATTATGTTTATCAATATGCAACTGGCTTTAGTG
CTGCCTCTGCCTTAGCGAAGAAGATTCTAAGCAAGGAAGAAAATGCCTTAGAAAACTACTTGAACTATCTAAAAGCTGGT
AATAGTGACTACCCAATCGAAGTCATGAAAAAAGCCGGCGTAGATATGACTAAAGCAGATTATCTAAAAGAAGCCATGCA
AGTCTTCGCACAACGCCTAGACGAACTAGAAGCACTAGTAAGTGAGCTAGAAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

57.022

97.686

0.557

Multiple sequence alignment