Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QML50_RS09030 Genome accession   NZ_OX346403
Coordinates   1809697..1810413 (+) Length   238 a.a.
NCBI ID   WP_016251015.1    Uniprot ID   S1QZC3
Organism   Enterococcus cecorum isolate CIRMBP-1283     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804697..1815413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML50_RS09015 (CIRMBP1283_01813) - 1804911..1805747 (-) 837 WP_016251018.1 PRD domain-containing protein -
  QML50_RS09020 (CIRMBP1283_01814) - 1805962..1807146 (-) 1185 WP_171313805.1 nucleoside transporter C-terminal domain-containing protein -
  QML50_RS09025 (CIRMBP1283_01815) treP 1807358..1809361 (-) 2004 WP_016251016.1 PTS system trehalose-specific EIIBC component -
  QML50_RS09030 (CIRMBP1283_01816) treR 1809697..1810413 (+) 717 WP_016251015.1 trehalose operon repressor Regulator
  QML50_RS09035 (CIRMBP1283_01817) - 1810461..1810688 (-) 228 WP_016251014.1 hypothetical protein -
  QML50_RS09040 (CIRMBP1283_01818) - 1810774..1812174 (-) 1401 WP_060470699.1 glycoside hydrolase family 1 protein -
  QML50_RS09045 (CIRMBP1283_01819) - 1812323..1812985 (+) 663 Protein_1735 PTS transporter subunit EIIC -
  QML50_RS09050 (CIRMBP1283_01820) - 1813037..1813759 (+) 723 WP_047242161.1 GntR family transcriptional regulator -
  QML50_RS09055 (CIRMBP1283_01821) - 1813874..1815235 (-) 1362 WP_047242162.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27948.89 Da        Isoelectric Point: 6.9278

>NTDB_id=1155008 QML50_RS09030 WP_016251015.1 1809697..1810413(+) (treR) [Enterococcus cecorum isolate CIRMBP-1283]
MKIYELIYQQLESEILLGNYPPETFLPSESQLAKHFEASRDTIRKALQQLTNHGYIKKVQGKGSLVLRREQLRFPVSGLT
SYKELQNAYGYDSSTQVESLTKLIVKKELAEKTGFEENHEVWSVLRSRKIDGQKVILDWDLIALEFVKELDTEIAKDSLY
AYFEKQLGLEISFAEKEITVDPVKTLDKLYLDLNEQDTHIVSVTSRVFLKNMRQFQYTESHHRLDKFKFHDFARRHQL

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1155008 QML50_RS09030 WP_016251015.1 1809697..1810413(+) (treR) [Enterococcus cecorum isolate CIRMBP-1283]
ATGAAAATATATGAATTAATCTATCAACAATTAGAAAGTGAAATCTTATTGGGAAATTATCCCCCAGAAACCTTTTTACC
AAGTGAAAGCCAATTAGCTAAGCACTTTGAAGCCTCACGCGATACGATTCGCAAAGCCTTGCAGCAATTGACCAACCATG
GCTATATCAAAAAAGTTCAAGGTAAAGGTTCATTAGTCTTAAGAAGAGAACAGTTACGTTTCCCTGTTTCTGGTCTAACT
AGTTATAAAGAGTTACAAAATGCCTATGGTTATGATAGCAGCACCCAAGTCGAAAGTTTAACCAAGCTAATTGTCAAAAA
AGAACTAGCTGAAAAAACTGGCTTTGAAGAAAATCATGAAGTTTGGTCCGTCCTAAGAAGCCGTAAAATTGATGGGCAAA
AGGTAATTTTAGATTGGGATTTGATTGCGCTAGAATTTGTGAAAGAGCTCGATACTGAAATTGCCAAAGATTCCTTATAT
GCATATTTTGAAAAACAGCTCGGACTAGAAATCTCTTTTGCTGAAAAAGAAATTACGGTTGATCCTGTTAAAACCTTGGA
TAAATTATATTTGGATTTAAATGAGCAAGATACCCACATTGTTTCGGTGACAAGTCGCGTCTTCTTAAAAAATATGCGGC
AATTTCAATATACAGAAAGCCATCATCGCCTCGACAAGTTTAAATTTCATGATTTTGCTCGTCGCCACCAATTGTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S1QZC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

48.523

99.58

0.483

Multiple sequence alignment