Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNMOQ_RS13310 Genome accession   NZ_OX344834
Coordinates   2677156..2678526 (-) Length   456 a.a.
NCBI ID   WP_416349992.1    Uniprot ID   -
Organism   Mammaliicoccus lentus isolate M_lentus_chr     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2672156..2683526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNMOQ_RS13285 cysE 2672551..2673192 (-) 642 WP_016999408.1 serine O-acetyltransferase -
  ACNMOQ_RS13290 gltX 2673442..2674899 (-) 1458 WP_416349990.1 glutamate--tRNA ligase -
  ACNMOQ_RS13295 ispF 2674916..2675395 (-) 480 WP_416349991.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACNMOQ_RS13300 ispD 2675388..2676074 (-) 687 WP_016999405.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACNMOQ_RS13305 - 2676076..2677134 (-) 1059 WP_016999404.1 PIN/TRAM domain-containing protein -
  ACNMOQ_RS13310 radA 2677156..2678526 (-) 1371 WP_416349992.1 DNA repair protein RadA Machinery gene
  ACNMOQ_RS13315 - 2678682..2681147 (-) 2466 WP_016999402.1 ATP-dependent Clp protease ATP-binding subunit -
  ACNMOQ_RS13320 - 2681167..2682174 (-) 1008 WP_016999401.1 protein arginine kinase -
  ACNMOQ_RS13325 - 2682176..2682712 (-) 537 WP_016999400.1 UvrB/UvrC motif-containing protein -
  ACNMOQ_RS13330 - 2682727..2683188 (-) 462 WP_016999399.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50501.35 Da        Isoelectric Point: 7.7094

>NTDB_id=1154886 ACNMOQ_RS13310 WP_416349992.1 2677156..2678526(-) (radA) [Mammaliicoccus lentus isolate M_lentus_chr]
MAKKKVIFECLACGYQSPKWMGKCPNCGAWNQMEETIEHKETKGPKNTFKSDVPAQKIEKLKDIKDEDIPRILTKINEFN
RVLGGGVVEGSLVLIGGDPGIGKSTLLLQICAALSQQKNVLYVSGEESVRQTKLRAERLVEDSGELNVYAETNLEIIHSM
VQKEKPDVLVIDSIQTIYHPEVTSAPGSVSQVRECTQNLMHIAKQMNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFEG
DTHHAYRILRAVKNRFGSTNEMGIFEMKQTGLNEVKNPSEMFLEERTKHVAGSTIVATMEGTRPILVEVQALVTPTTFHN
PRRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKIAGGVKLSEPAVDLSIIIAIASSFQDKPTKGDDCFVGEVGLTGE
VRRVARIDQRVQEAAKLGFKRIIVPKNNLKGLEFPEGTQVIGVSTTREALKIAFNA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1154886 ACNMOQ_RS13310 WP_416349992.1 2677156..2678526(-) (radA) [Mammaliicoccus lentus isolate M_lentus_chr]
ATGGCGAAAAAGAAAGTAATATTTGAATGTTTAGCCTGTGGGTACCAATCGCCAAAATGGATGGGCAAATGTCCTAATTG
TGGCGCATGGAATCAAATGGAAGAAACAATAGAACATAAAGAAACAAAAGGGCCTAAAAATACATTTAAATCAGATGTAC
CAGCACAAAAAATAGAAAAATTAAAAGACATTAAAGATGAAGACATACCTAGAATTTTAACGAAAATTAATGAATTTAAC
CGCGTATTAGGCGGCGGAGTAGTAGAAGGGTCGCTTGTATTAATAGGTGGAGATCCGGGTATCGGTAAATCGACACTATT
ATTACAAATTTGTGCCGCTCTATCACAACAGAAAAACGTACTTTACGTCTCTGGTGAGGAATCGGTAAGACAAACTAAAT
TAAGAGCAGAAAGACTCGTTGAAGATTCAGGCGAACTAAATGTATACGCTGAAACAAACTTAGAAATTATTCATAGTATG
GTTCAAAAAGAAAAGCCAGATGTATTAGTAATAGATTCAATACAAACTATATACCATCCAGAAGTTACGTCGGCTCCTGG
TTCAGTATCTCAAGTGAGAGAATGTACACAGAATTTAATGCATATTGCTAAGCAAATGAATATAGCAACATTCATCGTTG
GACATGTTACGAAAGATGGACAAATTGCAGGTCCTAGATTGCTAGAACACATGGTGGATACCGTATTATATTTTGAAGGG
GACACACATCACGCTTATCGAATATTAAGAGCAGTTAAAAACCGTTTTGGTTCAACAAATGAAATGGGTATATTTGAAAT
GAAACAAACTGGCTTAAACGAAGTGAAAAATCCTTCAGAAATGTTCCTAGAAGAAAGAACAAAACATGTGGCTGGCTCGA
CTATTGTTGCGACTATGGAAGGAACTAGACCGATATTAGTTGAAGTACAGGCATTAGTAACGCCAACAACTTTCCATAAT
CCAAGAAGGATGGCTACAGGTATAGACCATAATAGATTGAGCTTGTTGATGGCAGTACTTGAAAAGAAAGAAAATTTCTT
ACTACAGCAACAAGATGCATACATTAAAATCGCTGGTGGTGTTAAATTAAGTGAGCCAGCAGTTGACTTAAGTATTATAA
TAGCAATAGCATCTAGTTTTCAGGATAAACCAACAAAAGGAGACGATTGTTTTGTTGGTGAAGTCGGCTTAACTGGAGAA
GTAAGAAGGGTTGCTAGAATTGACCAACGTGTTCAGGAAGCGGCTAAACTAGGTTTTAAACGCATCATCGTACCGAAAAA
TAATTTAAAAGGTTTAGAGTTCCCAGAAGGCACACAAGTTATTGGTGTTTCTACAACGAGAGAAGCATTGAAAATTGCCT
TTAATGCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-428)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.502

100

0.658
  radA Streptococcus pneumoniae Rx1

62.335

99.561

0.621
  radA Streptococcus pneumoniae D39

62.335

99.561

0.621
  radA Streptococcus pneumoniae R6

62.335

99.561

0.621
  radA Streptococcus pneumoniae TIGR4

62.335

99.561

0.621
  radA Streptococcus mitis NCTC 12261

62.335

99.561

0.621
  radA Streptococcus mitis SK321

62.335

99.561

0.621

Multiple sequence alignment