Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VPUCM_RS20515 Genome accession   NZ_CP007005
Coordinates   990609..991790 (+) Length   393 a.a.
NCBI ID   WP_005486564.1    Uniprot ID   A0AAW8PXL2
Organism   Vibrio parahaemolyticus UCM-V493     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 985609..996790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPUCM_RS20500 (VPUCM_20916) - 986976..987974 (+) 999 WP_025442814.1 LysR family transcriptional regulator -
  VPUCM_RS20505 (VPUCM_20917) - 988142..988750 (+) 609 WP_229614126.1 LysR family transcriptional regulator -
  VPUCM_RS25725 - 988805..989020 (+) 216 Protein_877 JAB domain-containing protein -
  VPUCM_RS20510 (VPUCM_20918) ylqF 989310..990254 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  VPUCM_RS20515 (VPUCM_20919) cqsA 990609..991790 (+) 1182 WP_005486564.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VPUCM_RS20520 (VPUCM_20920) cqsS 991868..993916 (-) 2049 WP_021450907.1 response regulator Regulator
  VPUCM_RS20525 (VPUCM_20921) - 994236..994529 (+) 294 Protein_881 HAD family phosphatase -
  VPUCM_RS20530 - 994801..995842 (+) 1042 Protein_882 IS481 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43838.17 Da        Isoelectric Point: 6.4984

>NTDB_id=115484 VPUCM_RS20515 WP_005486564.1 990609..991790(+) (cqsA) [Vibrio parahaemolyticus UCM-V493]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=115484 VPUCM_RS20515 WP_005486564.1 990609..991790(+) (cqsA) [Vibrio parahaemolyticus UCM-V493]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGCTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCTCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment