Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OGY80_RS03005 Genome accession   NZ_OX336253
Coordinates   630472..632697 (-) Length   741 a.a.
NCBI ID   WP_263337382.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 625657..674734 630472..632697 within 0


Gene organization within MGE regions


Location: 625657..674734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS02990 - 625657..626259 (-) 603 WP_263337375.1 DNA glycosylase -
  OGY80_RS02995 - 626296..626916 (-) 621 WP_049328503.1 phosphoribosylanthranilate isomerase -
  OGY80_RS03000 - 627019..630156 (-) 3138 WP_263337380.1 Mbeg1-like protein -
  OGY80_RS03005 comA 630472..632697 (-) 2226 WP_263337382.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OGY80_RS03010 - 632755..633807 (-) 1053 WP_263337385.1 RHS repeat protein -
  OGY80_RS03015 - 634085..634624 (-) 540 WP_263337388.1 hypothetical protein -
  OGY80_RS03020 - 634621..636756 (-) 2136 WP_263337391.1 RHS repeat-associated core domain-containing protein -
  OGY80_RS03025 - 636901..637482 (-) 582 WP_058948182.1 Imm26 family immunity protein -
  OGY80_RS03030 - 637513..641637 (-) 4125 WP_263337394.1 DUF6531 domain-containing protein -
  OGY80_RS03035 tagF 641971..642525 (+) 555 WP_263337396.1 type VI secretion system-associated protein TagF -
  OGY80_RS03040 tssA 642530..643588 (+) 1059 WP_263337399.1 type VI secretion system protein TssA -
  OGY80_RS03045 tssB 643665..644183 (+) 519 WP_070606732.1 type VI secretion system contractile sheath small subunit -
  OGY80_RS03050 tssC 644215..645714 (+) 1500 WP_070606729.1 type VI secretion system contractile sheath large subunit -
  OGY80_RS03055 - 645795..646277 (+) 483 WP_003761730.1 type VI secretion system tube protein Hcp -
  OGY80_RS03060 - 646443..647258 (+) 816 WP_263337409.1 type VI secretion system accessory protein TagJ -
  OGY80_RS03065 tssE 647292..647804 (+) 513 WP_263337410.1 type VI secretion system baseplate subunit TssE -
  OGY80_RS03070 - 647801..649777 (+) 1977 WP_263337411.1 type VI secretion system baseplate subunit TssF -
  OGY80_RS03075 tssG 649774..650814 (+) 1041 WP_263337412.1 type VI secretion system baseplate subunit TssG -
  OGY80_RS03080 tssH 650899..653550 (+) 2652 WP_263337413.1 type VI secretion system ATPase TssH -
  OGY80_RS03085 tssJ 653686..654309 (+) 624 WP_150538119.1 type VI secretion system lipoprotein TssJ -
  OGY80_RS03090 tssK 654343..655686 (+) 1344 WP_263337415.1 type VI secretion system baseplate subunit TssK -
  OGY80_RS03095 tssL 655711..656973 (+) 1263 WP_263337417.1 type VI secretion system protein TssL, long form -
  OGY80_RS03100 tssM 657005..660562 (+) 3558 WP_263337420.1 type VI secretion system membrane subunit TssM -
  OGY80_RS03105 tssI 660693..662966 (+) 2274 WP_150538115.1 type VI secretion system tip protein TssI/VgrG -
  OGY80_RS03110 - 662983..664119 (+) 1137 WP_263337424.1 DUF2169 domain-containing protein -
  OGY80_RS03115 - 664201..668346 (+) 4146 WP_263337426.1 DUF6531 domain-containing protein -
  OGY80_RS03120 - 668795..672961 (+) 4167 WP_263341825.1 RHS repeat-associated core domain-containing protein -
  OGY80_RS03125 - 672958..673251 (+) 294 WP_070695324.1 hypothetical protein -
  OGY80_RS03130 - 673254..673646 (+) 393 WP_263337439.1 hypothetical protein -
  OGY80_RS03135 - 673900..674385 (+) 486 WP_150538093.1 hypothetical protein -
  OGY80_RS03140 - 674411..674734 (+) 324 WP_070588183.1 sel1 repeat family protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80938.44 Da        Isoelectric Point: 9.8394

>NTDB_id=1154746 OGY80_RS03005 WP_263337382.1 630472..632697(-) (comA) [Neisseria sp. Marseille-Q5346]
MAWRFVLPAWVVGVVLSFALPFVPPWWVWLAVIIGALALCRKFAVAWLVLAVCVGMAFGVWRTGLVLAAQWPVGEASAKV
LTVEVADMPRDDGRRVQFAARAWDERGQAFDLMLSDYQRRDWAVGSRWSVSARVRPVIGEVNARGLNRETWALANGIDGM
GTLGRDRKLMRQGGGFGLANMRDAVSRSWQGTADKYPEFSDGIGLMRALSIGEQSALRPPLWQAFRPLGLTHLVSISGLH
VTMVAVLFAWLIKRIFRYLPWIPAKPRVWILAGGVASALFYALLAGFSVPTQRSVLMLAAFAWAWWHGSGGSGWTAWWQA
LAVVLLLDPLAVLGVGTWLSFGLVAALIWASSGRLKESGWRLAVRGQWAATVLSVVLLGYLFASLPLLSPLVNALAIPWF
SWVLTPLALLGSVFSFELVQLVAVFLAEYTLRGLVWLATVSPEFAVAAAPVPLLVLAMMAALLLLLPKGMGLKPWACLVL
LSFVFYRPAKLEEGVARVTVMDAGQGLSVLIQTRNRNLLFDTGTEQVAQTGIVPSLNAMGVRRLDSLILSHHDIDHDGGF
QSVAAVGTDKLLAGQPEFYPNAEFCQEDKWQWDGVDFELLRPSENAGKEDNDRSCVLRVVANGKALLITGDLGVKGEAGL
IEKYGNALYSQVLVLGHHGSSTASSGSFLHTVSPQYAVASSGYANAYKHPTVAVQNRVRAHGITLLRTDLSGALVFALGQ
DDIFQGRLKKDKFYWQKKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1154746 OGY80_RS03005 WP_263337382.1 630472..632697(-) (comA) [Neisseria sp. Marseille-Q5346]
ATGGCGTGGCGGTTTGTGTTGCCTGCTTGGGTGGTGGGTGTAGTGCTTTCGTTTGCGTTGCCGTTTGTGCCGCCATGGTG
GGTTTGGTTGGCTGTAATTATTGGCGCGCTTGCGTTGTGTCGAAAATTTGCTGTAGCTTGGTTGGTGCTGGCCGTCTGCG
TGGGCATGGCGTTTGGAGTGTGGCGGACAGGTCTGGTTTTGGCTGCTCAATGGCCTGTGGGGGAGGCATCGGCTAAAGTT
TTGACGGTTGAAGTGGCGGATATGCCGCGTGATGATGGACGGCGTGTGCAGTTTGCGGCAAGGGCTTGGGATGAACGTGG
GCAGGCTTTTGATTTGATGTTGTCGGATTATCAGCGGCGCGATTGGGCGGTGGGCAGCAGGTGGTCTGTATCGGCGCGGG
TAAGGCCGGTGATCGGTGAAGTGAATGCGCGCGGTTTGAACCGTGAAACATGGGCTTTGGCCAATGGTATCGATGGCATG
GGTACTTTGGGACGCGATAGGAAACTTATGCGGCAAGGCGGCGGTTTCGGTTTGGCTAATATGCGTGATGCGGTAAGCCG
AAGTTGGCAGGGAACGGCGGACAAATATCCTGAGTTTTCAGACGGCATAGGGCTGATGCGTGCTTTGAGTATTGGCGAGC
AATCGGCGTTGCGGCCGCCTTTGTGGCAGGCATTCCGGCCTTTGGGGCTGACGCACTTGGTCAGTATTTCGGGCTTGCAT
GTAACGATGGTGGCGGTATTGTTTGCCTGGCTGATCAAGCGAATTTTCCGTTATTTGCCGTGGATTCCGGCGAAACCGCG
TGTGTGGATATTGGCAGGTGGTGTTGCTAGTGCTTTGTTTTATGCGCTTTTGGCCGGTTTTTCCGTACCGACGCAACGCA
GTGTGTTGATGTTGGCTGCGTTTGCGTGGGCATGGTGGCACGGAAGTGGCGGCTCGGGCTGGACGGCATGGTGGCAGGCT
TTGGCCGTTGTTTTGTTGTTGGATCCGTTGGCAGTATTGGGCGTGGGAACGTGGTTGTCTTTCGGCTTGGTTGCTGCTTT
GATTTGGGCTTCATCAGGCCGTCTGAAAGAGTCGGGTTGGCGTTTGGCTGTACGGGGGCAATGGGCGGCAACGGTGTTGT
CGGTGGTATTGCTGGGCTATTTGTTTGCTTCGTTACCTTTGCTCAGTCCGTTGGTTAATGCTCTGGCTATTCCTTGGTTT
TCTTGGGTGTTGACGCCGTTGGCTTTGCTGGGTTCGGTTTTTTCTTTTGAACTTGTCCAGTTGGTAGCGGTATTTTTGGC
GGAATATACTTTGCGTGGTTTGGTATGGCTGGCTACGGTATCGCCTGAATTTGCCGTCGCAGCGGCGCCTGTACCTTTGC
TGGTGTTGGCGATGATGGCGGCTTTGTTGTTATTGTTGCCTAAAGGAATGGGCTTGAAACCTTGGGCATGTCTGGTTTTA
TTGAGCTTTGTGTTTTACCGTCCTGCCAAGCTGGAGGAGGGGGTGGCAAGAGTTACGGTGATGGATGCAGGACAAGGTTT
GTCGGTGTTGATACAAACGCGTAACCGCAATCTTTTGTTTGATACGGGAACGGAGCAAGTGGCGCAAACAGGTATTGTGC
CGAGTTTGAACGCGATGGGCGTGCGCCGTTTGGACAGCCTGATTTTGTCGCACCATGATATTGACCATGACGGCGGTTTT
CAAAGTGTAGCGGCTGTCGGTACCGATAAATTGCTTGCCGGACAACCTGAGTTTTATCCGAATGCAGAGTTTTGCCAAGA
AGACAAATGGCAATGGGACGGCGTAGATTTCGAGTTGCTCAGGCCGTCTGAAAATGCTGGTAAGGAAGATAATGACCGAA
GCTGCGTATTGCGTGTCGTAGCAAACGGCAAAGCCTTGTTGATAACCGGCGATTTGGGCGTGAAGGGCGAGGCCGGTTTG
ATTGAGAAATACGGCAATGCACTGTATAGCCAAGTGTTGGTATTGGGACATCACGGCAGCAGCACGGCTTCGTCGGGCAG
CTTTCTGCATACGGTTTCGCCGCAATATGCCGTGGCATCCAGCGGCTATGCCAATGCCTACAAACATCCGACCGTTGCCG
TACAAAATCGTGTCCGCGCGCACGGCATTACTTTGTTGAGAACTGATTTGTCAGGCGCGTTGGTGTTTGCTTTGGGACAG
GACGATATATTTCAAGGCCGTCTGAAAAAGGATAAGTTTTATTGGCAGAAGAAACCGTTTGAGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

69.783

99.595

0.695

Multiple sequence alignment