Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   OGY80_RS00630 Genome accession   NZ_OX336253
Coordinates   121838..123601 (+) Length   587 a.a.
NCBI ID   WP_263335982.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 116838..128601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS00610 recR 118610..119215 (+) 606 WP_263335966.1 recombination mediator RecR -
  OGY80_RS00615 - 119278..119565 (-) 288 WP_003683377.1 hypothetical protein -
  OGY80_RS00620 - 119780..121030 (+) 1251 WP_263335975.1 lipoprotein-releasing ABC transporter permease subunit -
  OGY80_RS00625 lolD 121023..121706 (+) 684 WP_263335979.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OGY80_RS00630 recD 121838..123601 (+) 1764 WP_263335982.1 exodeoxyribonuclease V subunit alpha Machinery gene
  OGY80_RS00635 - 123698..124897 (+) 1200 WP_263335985.1 hypothetical protein -
  OGY80_RS00640 - 124979..125380 (-) 402 WP_003679090.1 RNA-binding S4 domain-containing protein -
  OGY80_RS00645 - 125585..126544 (+) 960 WP_049333774.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  OGY80_RS00650 tilS 126636..127970 (+) 1335 WP_263335999.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64667.85 Da        Isoelectric Point: 5.5280

>NTDB_id=1154739 OGY80_RS00630 WP_263335982.1 121838..123601(+) (recD) [Neisseria sp. Marseille-Q5346]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNADKPLILQGRKLF
LGRMWQLEHDLAVEIKRLATAEAEEVNFMAASKSLSDWFDTKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFGLSPSIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEYPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPDHGFEIKGQPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVAEDNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFLEKGG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTESEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALKWQFEQPDEQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1154739 OGY80_RS00630 WP_263335982.1 121838..123601(+) (recD) [Neisseria sp. Marseille-Q5346]
ATGAATCCGACCGACTCCATCCTTTCCTCTGCCGCAGATGCGGCCATAGCTTTTTTCCGCCGCCACGAAGTACAGGGCGC
ATCCGTTATTGAACCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGCGG
ATGTCGATGCCTTAAGCAACTTGCCGAATTTGGTCGGCAATGCGGATAAACCGCTTATCCTGCAAGGCCGGAAATTGTTT
TTAGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGGCTGGCAACTGCCGAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATACTAAAGACAGCAAAGAGCAACGGGATGCTGCGGCTTTGG
CTTTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGTAAGACGACGACCGTAGCAAAGCTTTTGGGTCTG
ATTTGTAATAACAGTACGAAGCTGCCCCGTATCGCTTTGGCGGCGCCGACGGGCAAAGCGGCTGCGCATATGGCACGGGC
CTTACAGCGTGCTTTGGACGGTTTTGGTTTGTCTCCGAGCATTAAAGCGCATTTGGAAAATTTGGAAGGGCAGACTGTCC
ATCGATTGTTGAAACTGCGGCCGCCACAAATGCGCCCTGCGTTCAATCATGAATATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCATCAATGTTGGATTTGCCGCTGGTGTTGGATTTATTGCGTGCCGTGCCGACTGGCTGTCGTCTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGCTTGGGAGCCGTATTGGCGGCATTATCGCGTCCGACGGCTTTGGATA
AAGAAACTGCTGAGAAGTTGGAAGTGTACCTGCCCGATCATGGCTTTGAGATTAAAGGGCAGCCACAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGTGCAGACAGCGGTATCGGCTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAATTGGAAATGAAATCAGGCCGTCTGAAAGAACAGG
TTGCTTTGTTGTATCAAAAGCAACAGGATTATTGGCAGGCTGTGGCAGAAGATAATGTTGCACTCGCTTATGGTCATGCT
GCCGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATACTTGCAACGACA
AGGCAAGGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATCATGATTACCCACAATGATTACATGCTGGAAGTGT
TTAACGGCGACATCGGTCTGATTATGAAAGATGAAGAATCGTTGAATGGCTTGTCTGCCTATTTTCTTGAGAAAGGTGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTGCCATGACGGTGCATAAGAGCCAAGGTTCGGA
ATATCGGGAGGTATGGCTGTTGCCCCCGTCAGTGCCTGCAACGACGGAAAGCGAAGAGGAAGCCAGAGGTTTGGATAAGG
CTTTGCTTTACACGGCCATTACCCGTGCGCGTGAACGTTTTGTGTTTTGGGGAAATGCGGAGGAATTGTGTCAGGCTGTG
GGATGCCATCAAAAACGCAGGACGGCATTGGCCGATGCCTTGAAATGGCAGTTTGAACAGCCTGATGAGCAGGCTTCCGT
TTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-288)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.406

98.296

0.574

Multiple sequence alignment