Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OH548_RS01715 Genome accession   NZ_OX335302
Coordinates   435387..436763 (+) Length   458 a.a.
NCBI ID   WP_053949715.1    Uniprot ID   -
Organism   Apilactobacillus apinorum strain Fhon13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 430387..441763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH548_RS01690 (AAPFHON13_03380) - 430755..431708 (+) 954 WP_053949710.1 DMT family transporter -
  OH548_RS01695 (AAPFHON13_03390) - 431724..432392 (+) 669 WP_053949711.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  OH548_RS01700 (AAPFHON13_03400) - 432432..433769 (-) 1338 WP_053949712.1 aminopeptidase C -
  OH548_RS01705 (AAPFHON13_03410) rpiA 433909..434598 (-) 690 WP_053949713.1 ribose-5-phosphate isomerase RpiA -
  OH548_RS01710 (AAPFHON13_03420) - 434827..435363 (+) 537 WP_053949714.1 hypothetical protein -
  OH548_RS01715 (AAPFHON13_03430) radA 435387..436763 (+) 1377 WP_053949715.1 DNA repair protein RadA Machinery gene
  OH548_RS01720 (AAPFHON13_03440) - 436787..437869 (+) 1083 WP_053949716.1 PIN/TRAM domain-containing protein -
  OH548_RS01725 (AAPFHON13_03450) gltX 437985..439475 (+) 1491 WP_053949717.1 glutamate--tRNA ligase -
  OH548_RS01730 (AAPFHON13_03460) cysS 439597..441003 (+) 1407 WP_053949718.1 cysteine--tRNA ligase -
  OH548_RS01735 (AAPFHON13_03470) - 441007..441423 (+) 417 WP_053949719.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49683.90 Da        Isoelectric Point: 6.4046

>NTDB_id=1154705 OH548_RS01715 WP_053949715.1 435387..436763(+) (radA) [Apilactobacillus apinorum strain Fhon13]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEQTVQKETSSLKSSHRMDFNGKQTQPQLVKDVKFEKESRFETDSKE
FNRVLGGGVVPGSLILIGGDPGIGKSTLLLQISGQLSEKNQKILYVSGEESASQIKLRAERLAVNGANMYLYPETDMGAI
RSAIDEIQPDAVVIDSVQTISEPDVDSAIGSVSQVRAITADLMSIAKTNGITVFVVGHVTKGGSLAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLQEVANPSEVFLEERLKDANGSAIVVSMEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVLEKRAGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKNKGTDPAECYIGEIGL
TGEIRRVNRIEQRVLEAQKLGFKRVLVPKHNLSGWTAPDGIEVVGVATLSQAIKMALK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1154705 OH548_RS01715 WP_053949715.1 435387..436763(+) (radA) [Apilactobacillus apinorum strain Fhon13]
GTGGCTAAAGTTAAGACACAATTTGTTTGTGAAGAATGTGGATACATTTCTCCTAAGTATTTAGGACATTGTCCTAACTG
TGGAAAGTGGAATACATTTGAAGAACAAACCGTGCAAAAAGAAACATCTAGTTTAAAATCAAGCCATCGAATGGATTTCA
ATGGTAAGCAAACTCAACCACAATTAGTTAAAGATGTTAAGTTCGAAAAAGAATCAAGATTTGAGACTGATTCTAAAGAG
TTTAATCGTGTATTAGGGGGCGGGGTTGTTCCTGGCTCTTTAATCTTAATCGGTGGAGATCCTGGAATTGGAAAGTCAAC
ATTGCTTCTACAAATATCAGGACAACTTAGTGAGAAAAATCAAAAGATTTTATACGTATCTGGTGAAGAAAGTGCTAGTC
AAATTAAGCTTAGAGCTGAAAGACTAGCAGTGAATGGGGCCAATATGTATCTTTACCCTGAGACTGACATGGGTGCAATT
AGAAGTGCAATTGATGAGATTCAACCAGATGCAGTTGTGATTGACTCTGTTCAAACAATTTCCGAACCAGATGTTGATTC
AGCAATTGGTTCAGTTTCTCAAGTACGTGCAATTACCGCTGATTTAATGTCAATCGCCAAGACTAATGGAATTACAGTCT
TCGTGGTTGGCCATGTTACTAAGGGTGGTTCATTAGCTGGGCCAAAGACGTTAGAACACATGGTTGATACTGTTTTATAT
TTTGAAGGAGATATGCATCACTCCTACAGAATTTTAAGAGCAGTTAAAAACCGTTTTGGTTCAACAGACGAATTGGGAAT
ATTCGACATGCAAGAATCCGGATTACAAGAAGTTGCTAATCCCTCAGAAGTTTTCTTAGAGGAACGATTGAAAGATGCTA
ACGGTTCTGCAATTGTGGTTTCAATGGAAGGAACCAGACCAATTCTAGTTGAAATCCAAGCATTGGTAACCCCATCTGTT
TTTGGGAATGCGCAAAGAACAGCGACTGGAATCGACAGAAATCGGGTAGCGGTATTGATGGCCGTACTAGAAAAACGTGC
TGGATTGATGTTACAAAATCAAGATGCATTCCTAAAAGCTGCTGGTGGAGTGAAGTTAAACGAACCAGCAATTGATTTGG
CGGTTGCAATCAGTGTTGCATCTAGTTACAAGAACAAAGGGACTGATCCTGCAGAGTGTTATATTGGTGAAATTGGATTG
ACCGGAGAAATTAGAAGGGTTAATCGAATTGAACAACGAGTTTTAGAAGCTCAAAAGTTAGGCTTTAAGCGGGTGCTTGT
TCCCAAGCACAACTTATCTGGATGGACTGCTCCAGATGGAATTGAAGTAGTCGGGGTAGCAACATTATCCCAAGCGATAA
AAATGGCTTTAAAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

63.656

99.127

0.631
  radA Streptococcus pneumoniae D39

63.656

99.127

0.631
  radA Streptococcus pneumoniae R6

63.656

99.127

0.631
  radA Streptococcus pneumoniae TIGR4

63.656

99.127

0.631
  radA Streptococcus mitis NCTC 12261

63.656

99.127

0.631
  radA Streptococcus mitis SK321

63.656

99.127

0.631
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

99.782

0.616

Multiple sequence alignment