Detailed information NTG0115464

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VPUCM_RS13230
• Genome accession: NZ_CP007004
• Coordinates: 2860477..2861466 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus UCM-V493
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2855477..2866466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPUCM_RS13215 (VPUCM_2637)	recA	2856025..2857068 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
VPUCM_RS13220 (VPUCM_2638)	pncC	2857269..2857751 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
VPUCM_RS13225 (VPUCM_2639)	mutS	2857836..2860397 (+)	2562	WP_025442244.1	DNA mismatch repair protein MutS	-
VPUCM_RS13230 (VPUCM_2640)	rpoS	2860477..2861466 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
VPUCM_RS13235 (VPUCM_2641)	-	2861547..2862470 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
VPUCM_RS13240 (VPUCM_2642)	-	2862485..2863111 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VPUCM_RS13245 (VPUCM_2643)	surE	2863111..2863887 (-)	777	WP_025442245.1	5'/3'-nucleotidase SurE	-
VPUCM_RS13250 (VPUCM_2644)	truD	2863887..2864930 (-)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
VPUCM_RS13255 (VPUCM_2645)	ispF	2864977..2865453 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VPUCM_RS13260 (VPUCM_2646)	ispD	2865471..2866175 (-)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VPUCM_RS13265 (VPUCM_2647)	ftsB	2866177..2866458 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=115464 VPUCM_RS13230 WP_005478537.1 2860477..2861466(-) (rpoS) [Vibrio parahaemolyticus UCM-V493]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=115464 VPUCM_RS13230 WP_005478537.1 2860477..2861466(-) (rpoS) [Vibrio parahaemolyticus UCM-V493]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTTCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTCTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851