Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VPUCM_RS13100 Genome accession   NZ_CP007004
Coordinates   2838358..2838876 (-) Length   172 a.a.
NCBI ID   WP_023624250.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus UCM-V493     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833358..2843876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPUCM_RS13075 (VPUCM_2618) rimM 2833466..2834014 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  VPUCM_RS13080 (VPUCM_2619) rpsP 2834043..2834291 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  VPUCM_RS13085 (VPUCM_2620) ffh 2834501..2835883 (-) 1383 WP_005462555.1 signal recognition particle protein -
  VPUCM_RS13090 (VPUCM_2621) - 2836096..2836890 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  VPUCM_RS13095 (VPUCM_2622) - 2837016..2838296 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  VPUCM_RS13100 (VPUCM_2623) luxS 2838358..2838876 (-) 519 WP_023624250.1 S-ribosylhomocysteine lyase Regulator
  VPUCM_RS13105 (VPUCM_2624) - 2838943..2839548 (-) 606 WP_023624249.1 hypothetical protein -
  VPUCM_RS13110 (VPUCM_2625) gshA 2839573..2841141 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19102.84 Da        Isoelectric Point: 4.8520

>NTDB_id=115461 VPUCM_RS13100 WP_023624250.1 2838358..2838876(-) (luxS) [Vibrio parahaemolyticus UCM-V493]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDRVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=115461 VPUCM_RS13100 WP_023624250.1 2838358..2838876(-) (luxS) [Vibrio parahaemolyticus UCM-V493]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACCGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment