Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   RG28_RS22910 Genome accession   NZ_CP010122
Coordinates   4287289..4287921 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain C5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4282289..4292921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG28_RS22880 (RG28_21805) yheS 4282458..4284371 (+) 1914 WP_073521145.1 ABC transporter ATP-binding protein -
  RG28_RS22885 (RG28_21810) yheT 4284371..4285393 (+) 1023 WP_000057350.1 hydrolase -
  RG28_RS22890 (RG28_21815) yheU 4285387..4285605 (+) 219 WP_000907085.1 YheU family protein -
  RG28_RS22895 (RG28_21820) prkB 4285659..4286528 (+) 870 WP_001274684.1 phosphoribulokinase -
  RG28_RS22900 (RG28_21825) yhfA 4286583..4286987 (-) 405 WP_001148908.1 OsmC family protein -
  RG28_RS22910 (RG28_21835) crp 4287289..4287921 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  RG28_RS22915 (RG28_21840) yhfK 4287972..4290062 (+) 2091 WP_001345983.1 YccS/YhfK family putative transporter -
  RG28_RS22920 (RG28_21845) argD 4290129..4291349 (-) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  RG28_RS22925 (RG28_21850) pabA 4291435..4291998 (-) 564 WP_000601856.1 aminodeoxychorismate synthase component 2 -
  RG28_RS22930 (RG28_21855) fic 4292030..4292632 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  RG28_RS22935 (RG28_21860) yhfG 4292622..4292789 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=115451 RG28_RS22910 WP_000242755.1 4287289..4287921(+) (crp) [Escherichia coli strain C5]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=115451 RG28_RS22910 WP_000242755.1 4287289..4287921(+) (crp) [Escherichia coli strain C5]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment