Detailed information NTG0115440

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VPUCM_RS01410
• Genome accession: NZ_CP007004
• Coordinates: 301497..302543 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus UCM-V493
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 296497..307543

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPUCM_RS01380 (VPUCM_0272)	zapB	296667..296909 (+)	243	WP_005481417.1	cell division protein ZapB	-
VPUCM_RS01385 (VPUCM_0273)	rraA	297014..297526 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
VPUCM_RS01390 (VPUCM_0274)	-	297603..298520 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VPUCM_RS01395 (VPUCM_0275)	hslU	298705..300036 (-)	1332	WP_025441237.1	HslU--HslV peptidase ATPase subunit	-
VPUCM_RS01400 (VPUCM_0276)	hslV	300060..300611 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
VPUCM_RS01405 (VPUCM_0277)	ftsN	300775..301320 (-)	546	WP_005489623.1	cell division protein FtsN	-
VPUCM_RS01410 (VPUCM_0278)	cytR	301497..302543 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
VPUCM_RS01415 (VPUCM_0279)	priA	302837..305041 (-)	2205	WP_025441238.1	primosomal protein N'	-
VPUCM_RS01420 (VPUCM_0280)	rpmE	305336..305557 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
VPUCM_RS01425 (VPUCM_0281)	rpsJ	306015..306326 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
VPUCM_RS01430 (VPUCM_0282)	rplC	306341..306970 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=115440 VPUCM_RS01410 WP_254894148.1 301497..302543(-) (cytR) [Vibrio parahaemolyticus UCM-V493]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=115440 VPUCM_RS01410 WP_254894148.1 301497..302543(-) (cytR) [Vibrio parahaemolyticus UCM-V493]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCTGTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871